Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| acetyltransferase | H9N25_05505 | Not Available | Negative | 1324462 - 1325097 | 22435.3 |
| hypothetical protein | H9N25_05510 | Q47899 | Positive | 1325509 - 1326684 | 44652.0 |
| phosphoribosylformylglycinamidine cyclo-ligase | H9N25_05515 | A6UPQ3 | Negative | 1326944 - 1328125 | 43093.4 |
| glutamine synthetase iii | H9N25_05520 | P15623 | Negative | 1329462 - 1331636 | 80945.9 |
| energy transducer tonb | H9N25_05525 | Not Available | Positive | 1331839 - 1332687 | 30786.2 |
| hypothetical protein | H9N25_05530 | Not Available | Positive | 1332698 - 1333048 | 13345.6 |
| doxx family membrane protein | H9N25_05535 | Q5F7J4 | Negative | 1333661 - 1337322 | 133318.0 |
| voc family protein | H9N25_05540 | P45871 | Positive | 1337552 - 1337932 | 14608.5 |
| methyltransferase | H9N25_05545 | C6Y2G0 | Positive | 1337934 - 1338635 | 26416.9 |
| serine hydrolase | H9N25_05550 | Q6G6M9 | Positive | 1338722 - 1340533 | 67629.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

