Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| asparagine--trna ligase | H9N25_05455 | Q11Q97 | Negative | 1310169 - 1311617 | 55411.0 |
| transglutaminase family protein | H9N25_05460 | Q49757 | Negative | 1311740 - 1312735 | 37818.4 |
| alpha-e domain-containing protein | H9N25_05465 | P9WL96 | Negative | 1312841 - 1313776 | 36462.5 |
| circularly permuted type 2 atp-grasp protein | H9N25_05470 | Q55587 | Negative | 1313787 - 1315235 | 54474.7 |
| ferritin | H9N25_05475 | P43707 | Negative | 1315859 - 1316386 | 20455.2 |
| hypothetical protein | H9N25_05480 | Not Available | Negative | 1316898 - 1317257 | 13631.6 |
| gnat family n-acetyltransferase | H9N25_05485 | A9WNI5 | Negative | 1317370 - 1317930 | 21262.5 |
| mbl fold metallo-hydrolase | H9N25_05490 | O34760 | Negative | 1317931 - 1318770 | 31910.3 |
| dihydrolipoyl dehydrogenase | H9N25_05495 | O05940 | Negative | 1318964 - 1320352 | 48601.9 |
| tonb-dependent receptor | H9N25_05500 | P38370 | Positive | 1320968 - 1324360 | 122950.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

