Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sdr family oxidoreductase | H9N25_00505 | Q8A945 | Negative | 110011 - 110871 | 30453.7 |
| crp/fnr family transcriptional regulator | H9N25_00510 | Not Available | Negative | 110950 - 111519 | 21961.5 |
| nad(p)-dependent oxidoreductase | H9N25_00515 | H1ZZB0 | Negative | 111699 - 112526 | 29833.8 |
| arac family transcriptional regulator | H9N25_00520 | B5F0M9 | Negative | 112590 - 113444 | 32369.1 |
| helix-turn-helix transcriptional regulator | H9N25_00525 | T2KMF4 | Negative | 113585 - 114493 | 34901.0 |
| hypothetical protein | H9N25_00530 | Not Available | Negative | 114502 - 114858 | 13378.2 |
| hypothetical protein | H9N25_00535 | Not Available | Negative | 114862 - 115059 | 7460.29 |
| duf2147 domain-containing protein | H9N25_00540 | Not Available | Negative | 115079 - 115513 | 16272.8 |
| sdr family nad(p)-dependent oxidoreductase | H9N25_00545 | P39577 | Negative | 115524 - 116306 | 29289.9 |
| hypothetical protein | H9N25_00550 | Not Available | Negative | 116310 - 116483 | 6482.85 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

