Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf2075 domain-containing protein | H9N25_05355 | Q12179 | Positive | 1281216 - 1283399 | 83463.1 |
| tir domain-containing protein | H9N25_05360 | J8G8J6 | Positive | 1283950 - 1284444 | 18714.5 |
| hypothetical protein | H9N25_05365 | Not Available | Positive | 1284444 - 1285058 | 23666.4 |
| toll/interleukin-1 receptor domain-containing protein | H9N25_05370 | Not Available | Positive | 1285061 - 1285624 | 21148.1 |
| tir domain-containing protein | H9N25_05375 | Not Available | Positive | 1285641 - 1286423 | 30342.4 |
| toll/interleukin-1 receptor domain-containing protein | H9N25_05380 | Not Available | Positive | 1286426 - 1287598 | 45334.5 |
| doxx family membrane protein | H9N25_05385 | Not Available | Positive | 1287603 - 1288534 | 34006.5 |
| nucleoside triphosphate pyrophosphohydrolase family protein | H9N25_05390 | Q05247 | Positive | 1288548 - 1289432 | 33690.8 |
| hypothetical protein | H9N25_05395 | F8WQ30 | Positive | 1289468 - 1290436 | 38254.0 |
| helix-turn-helix transcriptional regulator | H9N25_05400 | P55409 | Negative | 1290529 - 1290759 | 8714.74 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

