Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tryptophan synthase subunit alpha | H9N25_05305 | A6GWZ0 | Positive | 1267522 - 1268289 | 28222.0 |
| nad(p)h-binding protein | H9N25_05310 | Q923D2 | Positive | 1268914 - 1269555 | 23490.4 |
| rhomboid family intramembrane serine protease | H9N25_05315 | P54493 | Negative | 1269669 - 1271138 | 54407.0 |
| gnat family n-acetyltransferase | H9N25_05320 | O29729 | Negative | 1271290 - 1271766 | 18384.0 |
| doxx family membrane protein | H9N25_05325 | P44923 | Positive | 1271948 - 1272552 | 22536.4 |
| efflux rnd transporter periplasmic adaptor subunit | H9N25_05330 | P24180 | Positive | 1272622 - 1273824 | 42744.4 |
| efflux rnd transporter permease subunit | H9N25_05335 | Q8G2M6 | Positive | 1273848 - 1277048 | 115797.0 |
| tolc family protein | H9N25_05340 | Q8CWA4 | Positive | 1277035 - 1278441 | 51075.7 |
| hypothetical protein | H9N25_05345 | Not Available | Positive | 1279903 - 1280721 | 30608.2 |
| nucleotide pyrophosphohydrolase | H9N25_05350 | Q9QY93 | Positive | 1280892 - 1281215 | 12356.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

