Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alpha-l-fucosidase | H9N25_05205 | Q99LJ1 | Positive | 1245347 - 1246150 | 30208.9 |
| doxx family membrane protein | H9N25_05210 | Not Available | Positive | 1246449 - 1247473 | 37557.4 |
| family 43 glycosylhydrolase | H9N25_05215 | P45796 | Negative | 1247631 - 1249013 | 51486.3 |
| doxx family membrane protein | H9N25_05220 | Q5ZWR1 | Positive | 1250090 - 1252632 | 92319.5 |
| Trna-leu | Not Available | Not Available | Positive | 1252781 - 1252864 | Not Available |
| Trna-gly | Not Available | Not Available | Positive | 1252937 - 1253012 | Not Available |
| doxx family membrane protein | H9N25_05235 | B4S427 | Negative | 1253107 - 1253594 | 18389.1 |
| bifunctional udp-n-acetylmuramoyl-tripeptide:d-alanyl-d-alanine ligase/alanine racemase | H9N25_05240 | Q97LR2 | Positive | 1253656 - 1256115 | 91911.1 |
| duf502 domain-containing protein | H9N25_05245 | Q8VY49 | Positive | 1256251 - 1256841 | 21581.8 |
| arsenate reductase (glutaredoxin) | H9N25_05250 | P76569 | Positive | 1256852 - 1257196 | 13184.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

