Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | H9N25_05155 | Not Available | Positive | 1234005 - 1234172 | 6143.21 |
| esterase family protein | H9N25_05160 | P9WM38 | Positive | 1234367 - 1235185 | 30963.0 |
| hypothetical protein | H9N25_05165 | Not Available | Positive | 1235433 - 1235687 | 9750.42 |
| tonb-dependent receptor | H9N25_05170 | T2KM18 | Positive | 1236465 - 1239656 | 117857.0 |
| ragb/susd family nutrient uptake outer membrane protein | H9N25_05175 | T2KN63 | Positive | 1239674 - 1241620 | 74075.8 |
| duf4959 domain-containing protein | H9N25_05180 | Not Available | Positive | 1241644 - 1242846 | 44541.3 |
| duf5013 domain-containing protein | H9N25_05185 | Not Available | Positive | 1242878 - 1244101 | 44513.0 |
| Trna-leu | Not Available | Not Available | Positive | 1244415 - 1244501 | Not Available |
| Trna-gly | Not Available | Not Available | Positive | 1244569 - 1244644 | Not Available |
| hypothetical protein | H9N25_05200 | Not Available | Positive | 1245073 - 1245354 | 10456.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

