Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| response regulator transcription factor | H9N25_05105 | P94514 | Negative | 1218695 - 1219420 | 27661.7 |
| histidine kinase | H9N25_05110 | P94513 | Negative | 1219417 - 1220913 | 57518.3 |
| abc transporter atp-binding protein | H9N25_05115 | P32010 | Positive | 1221225 - 1222124 | 33096.2 |
| hypothetical protein | H9N25_05120 | Q5RFP3 | Positive | 1222366 - 1225638 | 124887.0 |
| helix-turn-helix transcriptional regulator | H9N25_05125 | A8AL27 | Negative | 1225894 - 1226835 | 36346.8 |
| efflux rnd transporter periplasmic adaptor subunit | H9N25_05130 | P25196 | Negative | 1226859 - 1227959 | 39703.0 |
| efflux rnd transporter permease subunit | H9N25_05135 | P25197 | Negative | 1227973 - 1231257 | 119406.0 |
| tolc family protein | H9N25_05140 | Not Available | Negative | 1231271 - 1232662 | 51290.0 |
| srpbcc family protein | H9N25_05145 | Not Available | Negative | 1232900 - 1233319 | 15864.2 |
| hydrolase | H9N25_05150 | Not Available | Negative | 1233525 - 1233803 | 10627.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

