Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hamp domain-containing histidine kinase | H9N25_05005 | Q9ZHD4 | Negative | 1200664 - 1202016 | 51474.9 |
| response regulator transcription factor | H9N25_05010 | Q02540 | Negative | 1202017 - 1202694 | 25533.2 |
| sdr family oxidoreductase | H9N25_05015 | Q9X248 | Negative | 1203006 - 1203788 | 28142.7 |
| altronate dehydratase | H9N25_05020 | P42604 | Negative | 1204016 - 1205653 | 59334.0 |
| l-fucose:h+ symporter permease | H9N25_05025 | P11551 | Negative | 1205661 - 1206971 | 47849.5 |
| arac family transcriptional regulator | H9N25_05030 | Q65Q30 | Positive | 1207320 - 1208189 | 33532.4 |
| helix-turn-helix domain-containing protein | H9N25_05035 | A0A0H2ZIC3 | Negative | 1208407 - 1209366 | 35644.0 |
| dinb family protein | H9N25_05040 | Not Available | Positive | 1209501 - 1209995 | 18732.6 |
| dinb family protein | H9N25_05045 | Not Available | Positive | 1209999 - 1210505 | 19220.9 |
| hypothetical protein | H9N25_05050 | Not Available | Positive | 1210520 - 1210933 | 16036.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

