Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ubia-like protein eboc | H9N25_04955 | Q971A3 | Positive | 1187580 - 1188434 | 30572.4 |
| 3-dehydroquinate synthase | H9N25_04960 | Q088S6 | Positive | 1188462 - 1189625 | 43218.4 |
| metabolite traffic protein eboe | H9N25_04965 | Not Available | Positive | 1189629 - 1190801 | 43970.5 |
| alkaline phosphatase family protein | H9N25_04970 | O94323 | Positive | 1190805 - 1192154 | 51298.5 |
| hypothetical protein | H9N25_04975 | Not Available | Negative | 1192518 - 1192916 | 14824.2 |
| arac family transcriptional regulator | H9N25_04980 | P54722 | Negative | 1192978 - 1193901 | 35342.5 |
| sdr family nad(p)-dependent oxidoreductase | H9N25_04985 | A6SSW9 | Negative | 1193967 - 1194827 | 31667.4 |
| efflux rnd transporter permease subunit | H9N25_04990 | P94177 | Negative | 1194926 - 1198069 | 116569.0 |
| efflux rnd transporter periplasmic adaptor subunit | H9N25_04995 | P13510 | Negative | 1198098 - 1199186 | 39726.5 |
| tolc family protein | H9N25_05000 | P13509 | Negative | 1199192 - 1200457 | 47845.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

