Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter riviphilus SW-16
Accession NumberCP061171.1
Gene Summary
Adenine Count
Not Available
Thymine Count
Not Available
Guanine Count
Not Available
Cytosine Count
Not Available
Genome Length
Not Available
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| response regulator transcription factor | H9N25_00455 | P70955 | - | 98769 - 99446 | 25984.0 |
| sensor histidine kinase | H9N25_00460 | Q5HLG3 | - | 99443 - 100531 | 41517.2 |
| hypothetical protein | H9N25_00465 | Not Available | + | 100733 - 102046 | 49435.4 |
| cation:dicarboxylase symporter family transporter | H9N25_00470 | P96603 | + | 102060 - 103364 | 47594.1 |
| phosphoenolpyruvate carboxykinase (atp) | H9N25_00475 | A0LXJ9 | + | 103376 - 104968 | 58746.1 |
| cation:dicarboxylase symporter family transporter | H9N25_00480 | P96603 | + | 105016 - 106212 | 43393.3 |
| malate dehydrogenase (quinone) | H9N25_00485 | A6H0E6 | + | 106234 - 107811 | 58004.7 |
| nuclear transport factor 2 family protein | H9N25_00490 | Not Available | - | 108212 - 108535 | 11969.0 |
| sdr family oxidoreductase | H9N25_00495 | P55336 | - | 108557 - 109348 | 27635.9 |
| winged helix-turn-helix transcriptional regulator | H9N25_00500 | P37486 | + | 109490 - 109876 | 14943.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.