Pedobacter foliorum R-74623

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter foliorum R-74623 is a bacterial species characterized by the presence of flagella, which facilitates motility. This trait is significant as it enables the organism to navigate its environment, potentially aiding in its survival and interaction with other microorganisms. Genomic analysis reveals that Pedobacter foliorum R-74623 has a single replicon, indicating a streamlined genetic structure. This characteristic can influence the organism's replication efficiency and overall genomic stability. The genetic sequence of Pedobacter foliorum R-74623 is cataloged under the accession number CP162529.1, providing a reference point for further studies and comparisons with related species. Understanding its genetic makeup can offer insights into its physiological capabilities and ecological roles. In an ecological context, the presence of flagella suggests that Pedobacter foliorum R-74623 may play an active role in its habitat, possibly contributing to nutrient cycling or interacting with plant surfaces, given the genus's association with various environments. Such motility may enhance its ability to colonize niches, a crucial aspect of its ecological strategy. Overall, the traits of Pedobacter foliorum R-74623 reflect its adaptive mechanisms and potential ecological significance within its environment.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter foliorum
StrainR-74623

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter foliorum R-74623, Complete Genome

Gene Summary

Adenine Count

1904165 bp

Thymine Count

1903103 bp

Guanine Count

1162222 bp

Cytosine Count

1161565 bp

Genome Length

6131055 bp

Protein-coding Genes

5009 genes

Non-Coding Genes

81 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
aminotransferase class i/ii-fold pyridoxal phosphate-dependent enzymeAB3465_01610C8V1D1Negative401310 - 40244041567.9
xre family transcriptional regulatorAB3465_01615P23789Negative402462 - 40323829393.1
giy-yig nuclease family proteinAB3465_01620Not AvailablePositive403374 - 40372413835.9
basic secretory protein-like proteinAB3465_01625Q11DI2Negative403790 - 406855114895.0
transglycosylase domain-containing proteinAB3465_01630O66874Negative406950 - 40939793323.0
polyphosphate kinase 2 family proteinAB3465_01635Q6N140Positive409620 - 41050134472.0
helix-turn-helix transcriptional regulatorAB3465_01640Q46791Positive410638 - 41132126206.4
tonb-dependent receptor plug domain-containing proteinAB3465_01645A7MXY8Positive411676 - 41372778032.4
ynce family proteinAB3465_01650Not AvailablePositive413733 - 41488442693.1
pkd domain-containing proteinAB3465_01655Not AvailablePositive414903 - 41586836202.3

Displaying genes 321 – 330 of 549 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.