Pedobacter foliorum R-74623

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter foliorum R-74623 is a bacterial species characterized by the presence of flagella, which facilitates motility. This trait is significant as it enables the organism to navigate its environment, potentially aiding in its survival and interaction with other microorganisms. Genomic analysis reveals that Pedobacter foliorum R-74623 has a single replicon, indicating a streamlined genetic structure. This characteristic can influence the organism's replication efficiency and overall genomic stability. The genetic sequence of Pedobacter foliorum R-74623 is cataloged under the accession number CP162529.1, providing a reference point for further studies and comparisons with related species. Understanding its genetic makeup can offer insights into its physiological capabilities and ecological roles. In an ecological context, the presence of flagella suggests that Pedobacter foliorum R-74623 may play an active role in its habitat, possibly contributing to nutrient cycling or interacting with plant surfaces, given the genus's association with various environments. Such motility may enhance its ability to colonize niches, a crucial aspect of its ecological strategy. Overall, the traits of Pedobacter foliorum R-74623 reflect its adaptive mechanisms and potential ecological significance within its environment.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter foliorum
StrainR-74623

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter foliorum R-74623, Complete Genome

Gene Summary

Adenine Count

1904165 bp

Thymine Count

1903103 bp

Guanine Count

1162222 bp

Cytosine Count

1161565 bp

Genome Length

6131055 bp

Protein-coding Genes

5009 genes

Non-Coding Genes

81 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type ix secretion system membrane protein porp/sprfAB3465_00610Not AvailableNegative154012 - 15499836761.2
gliding motility-associated c-terminal domain-containing proteinAB3465_00615F0T377Negative154998 - 15594234580.9
hypothetical proteinAB3465_00620Not AvailableNegative155962 - 15671425455.1
pkd-like domain-containing proteinAB3465_00625Not AvailableNegative156745 - 161286157275.0
hypothetical proteinAB3465_00630Not AvailableNegative162016 - 16277129019.2
hypothetical proteinAB3465_00635Not AvailableNegative162874 - 16319112143.9
tonb-dependent receptor plug domain-containing proteinAB3465_00640T2KPJ3Positive163943 - 16635188701.5
ragb/susd family nutrient uptake outer membrane proteinAB3465_00645A7LXT5Positive166378 - 16767048274.3
susc/raga family tonb-linked outer membrane proteinAB3465_00650T2KMI3Positive167676 - 170744111696.0
ragb/susd family nutrient uptake outer membrane proteinAB3465_00655T2KPM5Positive170763 - 17228958303.8

Displaying genes 121 – 130 of 549 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.