Thiothrix subterranea UQM 41459, Ku-5

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Thiotrichales

Family

Thiotrichaceae

Genus

Thiothrix

Description

Thiothrix subterranea UQM 41459, also known as Ku-5, is a Gram-negative bacterium characterized by its rod shape. This organism is notable for possessing four replicons, which may be indicative of a complex genomic architecture. The availability of multiple accessions, specifically CP053482.1, CP053483.1, CP053484.1, and CP053485.1, suggests that detailed genomic data is accessible for researchers interested in studying this bacterium. The Gram-negative classification of Thiothrix subterranea UQM 41459 indicates that it has a thin peptidoglycan layer surrounded by an outer membrane, which is a common feature among bacteria in this category. This structural characteristic can influence its susceptibility to antibiotics and its interaction with the environment. The presence of multiple replicons may provide insights into the organism's adaptability and genetic diversity, potentially allowing it to thrive in various ecological niches. Understanding the genomic structure of Thiothrix subterranea UQM 41459 could contribute to knowledge regarding its metabolic capabilities and ecological roles. For instance, bacteria of this genus are often associated with sulfur metabolism, highlighting their potential importance in biogeochemical cycles, particularly in sulfur-rich environments. Overall, the unique traits of Thiothrix subterranea UQM 41459 position it as a subject of interest in microbiological and ecological studies.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderThiotrichales
FamilyThiotrichaceae
GenusThiothrix
SpeciesThiothrix subterranea
StrainUQM 41459, Ku-5

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Thiothrix subterranea UQM 41459, Ku-5, Complete Genome

Gene Summary

Adenine Count

985194 bp

Thymine Count

987387 bp

Guanine Count

1033662 bp

Cytosine Count

1030425 bp

Genome Length

4036668 bp

Protein-coding Genes

3893 genes

Non-Coding Genes

62 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hydrogenase formation protein hypdHMY34_04110P26411Negative866162 - 86730441883.7
hypc/hybg/hupf family hydrogenase formation chaperoneHMY34_04115P40428Negative867301 - 86758510128.3
act domain proteinHMY34_04120P0A9I3Negative867600 - 86811218323.9
hypothetical proteinHMY34_04125Not AvailableNegative868233 - 8684487877.7
hydrogenase nickel incorporation protein hypbHMY34_04130Q43949Negative868523 - 86927226739.2
hydrogenase maturation nickel metallochaperone hypaHMY34_04135Q0A726Negative869272 - 86961312851.6
nad(p)h-dependent oxidoreductaseHMY34_04140O34475Negative869653 - 87027623186.7
sulfate transporter cyszHMY34_04145B7LL71Positive870361 - 87108927282.2
trna (adenosine(37)-n6)-threonylcarbamoyltransferase complex dimerization subunit type 1 tsabHMY34_04150Q7CQE0Negative871199 - 87189724145.1
atp-dependent dna helicaseHMY34_04155P76257Negative871878 - 87390575241.3

Displaying genes 821 – 830 of 4005 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.