Thiothrix subterranea UQM 41459, Ku-5

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Thiotrichales

Family

Thiotrichaceae

Genus

Thiothrix

Description

Thiothrix subterranea UQM 41459, also known as Ku-5, is a Gram-negative bacterium characterized by its rod shape. This organism is notable for possessing four replicons, which may be indicative of a complex genomic architecture. The availability of multiple accessions, specifically CP053482.1, CP053483.1, CP053484.1, and CP053485.1, suggests that detailed genomic data is accessible for researchers interested in studying this bacterium. The Gram-negative classification of Thiothrix subterranea UQM 41459 indicates that it has a thin peptidoglycan layer surrounded by an outer membrane, which is a common feature among bacteria in this category. This structural characteristic can influence its susceptibility to antibiotics and its interaction with the environment. The presence of multiple replicons may provide insights into the organism's adaptability and genetic diversity, potentially allowing it to thrive in various ecological niches. Understanding the genomic structure of Thiothrix subterranea UQM 41459 could contribute to knowledge regarding its metabolic capabilities and ecological roles. For instance, bacteria of this genus are often associated with sulfur metabolism, highlighting their potential importance in biogeochemical cycles, particularly in sulfur-rich environments. Overall, the unique traits of Thiothrix subterranea UQM 41459 position it as a subject of interest in microbiological and ecological studies.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderThiotrichales
FamilyThiotrichaceae
GenusThiothrix
SpeciesThiothrix subterranea
StrainUQM 41459, Ku-5

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Thiothrix subterranea UQM 41459, Ku-5, Complete Genome

Gene Summary

Adenine Count

3164 bp

Thymine Count

3057 bp

Guanine Count

2974 bp

Cytosine Count

2923 bp

Genome Length

12118 bp

Protein-coding Genes

16 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
duf4350 domain-containing proteinHMY34_00010Not AvailablePositive113 - 113238746.8
moxr family atpaseHMY34_00015P94474Positive1107 - 208135702.6
duf58 domain-containing proteinHMY34_00020P94475Positive2078 - 338549343.2
methionine synthaseHMY34_00025Q9KUW9Positive3458 - 7141135121.0
sh3 domain-containing proteinHMY34_00030P65319Negative7444 - 832531425.6
lysr family transcriptional regulatorHMY34_00035P25544Negative8355 - 928434457.5
ribulose-bisphosphate carboxylaseHMY34_00040Q9ZHZ4Positive9447 - 1082650526.1
cbbq/nirq/norq/gpvn family proteinHMY34_00045Q51858Positive10907 - 1171029499.3
vwa domain-containing proteinHMY34_00050Q2YJT9Positive11717 - 1405088429.8
hypothetical proteinHMY34_00055Not AvailableNegative14084 - 1457217678.8

Displaying genes 1 – 10 of 4005 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.