Thiothrix subterranea UQM 41459, Ku-5

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Thiotrichales

Family

Thiotrichaceae

Genus

Thiothrix

Description

Thiothrix subterranea UQM 41459, also known as Ku-5, is a Gram-negative bacterium characterized by its rod shape. This organism is notable for possessing four replicons, which may be indicative of a complex genomic architecture. The availability of multiple accessions, specifically CP053482.1, CP053483.1, CP053484.1, and CP053485.1, suggests that detailed genomic data is accessible for researchers interested in studying this bacterium. The Gram-negative classification of Thiothrix subterranea UQM 41459 indicates that it has a thin peptidoglycan layer surrounded by an outer membrane, which is a common feature among bacteria in this category. This structural characteristic can influence its susceptibility to antibiotics and its interaction with the environment. The presence of multiple replicons may provide insights into the organism's adaptability and genetic diversity, potentially allowing it to thrive in various ecological niches. Understanding the genomic structure of Thiothrix subterranea UQM 41459 could contribute to knowledge regarding its metabolic capabilities and ecological roles. For instance, bacteria of this genus are often associated with sulfur metabolism, highlighting their potential importance in biogeochemical cycles, particularly in sulfur-rich environments. Overall, the unique traits of Thiothrix subterranea UQM 41459 position it as a subject of interest in microbiological and ecological studies.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderThiotrichales
FamilyThiotrichaceae
GenusThiothrix
SpeciesThiothrix subterranea
StrainUQM 41459, Ku-5

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Thiothrix subterranea UQM 41459, Ku-5, Complete Genome

Gene Summary

Adenine Count

985194 bp

Thymine Count

987387 bp

Guanine Count

1033662 bp

Cytosine Count

1030425 bp

Genome Length

4036668 bp

Protein-coding Genes

3893 genes

Non-Coding Genes

62 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
n-6 dna methylaseHMY34_14210Q60296Negative2863140 - 2866970145668.0
uma2 family endonucleaseHMY34_14215Not AvailableNegative2866985 - 286744317214.5
fluoride efflux transporter crcbHMY34_14220B7UZG1Positive2867559 - 286793913660.2
dna helicase recqHMY34_14225P40724Positive2867957 - 286978969406.6
hypothetical proteinHMY34_14230Not AvailablePositive2869886 - 28701439575.42
duf3368 domain-containing proteinHMY34_14235Not AvailablePositive2870143 - 287060116561.4
tir domain-containing proteinHMY34_14240Q54HT1Negative2870612 - 2874988162170.0
16s rrna (adenine(1518)-n(6)/adenine(1519)-n(6))- dimethyltransferase rsmaHMY34_14245Q4ZMG5Negative2875112 - 287590630103.4
ompa family proteinHMY34_14250P37665Negative2875903 - 287824582696.8
hypothetical proteinHMY34_14255Not AvailableNegative2878263 - 287867315412.4

Displaying genes 2841 – 2850 of 4005 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.