Thiothrix subterranea UQM 41459, Ku-5

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Thiotrichales

Family

Thiotrichaceae

Genus

Thiothrix

Description

Thiothrix subterranea UQM 41459, also known as Ku-5, is a Gram-negative bacterium characterized by its rod shape. This organism is notable for possessing four replicons, which may be indicative of a complex genomic architecture. The availability of multiple accessions, specifically CP053482.1, CP053483.1, CP053484.1, and CP053485.1, suggests that detailed genomic data is accessible for researchers interested in studying this bacterium. The Gram-negative classification of Thiothrix subterranea UQM 41459 indicates that it has a thin peptidoglycan layer surrounded by an outer membrane, which is a common feature among bacteria in this category. This structural characteristic can influence its susceptibility to antibiotics and its interaction with the environment. The presence of multiple replicons may provide insights into the organism's adaptability and genetic diversity, potentially allowing it to thrive in various ecological niches. Understanding the genomic structure of Thiothrix subterranea UQM 41459 could contribute to knowledge regarding its metabolic capabilities and ecological roles. For instance, bacteria of this genus are often associated with sulfur metabolism, highlighting their potential importance in biogeochemical cycles, particularly in sulfur-rich environments. Overall, the unique traits of Thiothrix subterranea UQM 41459 position it as a subject of interest in microbiological and ecological studies.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderThiotrichales
FamilyThiotrichaceae
GenusThiothrix
SpeciesThiothrix subterranea
StrainUQM 41459, Ku-5

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Thiothrix subterranea UQM 41459, Ku-5, Complete Genome

Gene Summary

Adenine Count

985194 bp

Thymine Count

987387 bp

Guanine Count

1033662 bp

Cytosine Count

1030425 bp

Genome Length

4036668 bp

Protein-coding Genes

3893 genes

Non-Coding Genes

62 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
escu/yscu/hrcu family type iii secretion system export apparatus switch proteinHMY34_05460P69986Positive1138732 - 113979039546.1
nfed family proteinHMY34_05465P0AAS3Positive1139802 - 114032919670.9
type iii secretion system export apparatus subunit sctvHMY34_05470P69955Positive1140360 - 114239974105.2
escn/yscn/hrcn family type iii secretion system atpaseHMY34_05475Q7ARI8Positive1142396 - 114373048473.9
ysco family type iii secretion system apparatus proteinHMY34_05480Not AvailablePositive1143736 - 114415816707.9
type iii secretion system stator protein sctlHMY34_05485Q01253Negative1144112 - 114472922937.6
sctk family type iii secretion system sorting platform proteinHMY34_05490Not AvailableNegative1144707 - 114540226715.8
cyclic nucleotide-binding domain-containing proteinHMY34_05495Not AvailableNegative1145498 - 114599218970.9
bola/ibag family iron-sulfur metabolism proteinHMY34_05500P73055Positive1146106 - 11463428250.81
tigr00730 family rossman fold proteinHMY34_05505Q851C7Positive1146342 - 114706726863.3

Displaying genes 1091 – 1100 of 4005 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.