Xanthobacter dioxanivorans YN2

Gram-negative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Xanthobacteraceae

Genus

Xanthobacter

Description

Xanthobacter dioxanivorans YN2 is a Gram-negative bacterium notable for its ability to degrade dioxane, an emerging contaminant in groundwater. This species is characterized by the presence of flagella, which facilitate motility and can enhance its ability to colonize various environments. The genomic structure of X. dioxanivorans YN2 is distinguished by the presence of five replicons, indicating a complex genome organization that may contribute to its metabolic versatility. Each of these replicons may harbor essential genes involved in the bacterium's degradation pathways and survival mechanisms in diverse ecological niches. The accession numbers associated with the genome of Xanthobacter dioxanivorans YN2 are CP063362.1, CP063363.1, CP063364.1, CP063365.1, and CP063366.1. These sequences provide valuable resources for further research into the genetic and biochemical pathways that enable this organism to break down dioxane and potentially other xenobiotic compounds. The ecological significance of Xanthobacter dioxanivorans YN2 lies in its role in bioremediation. Its ability to metabolize harmful pollutants can contribute to the restoration of contaminated sites, highlighting the importance of such microorganisms in environmental microbiology and the development of sustainable remediation strategies.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyXanthobacteraceae
GenusXanthobacter
SpeciesXanthobacter dioxanivorans
StrainYN2

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Xanthobacter dioxanivorans YN2, Complete Genome

Gene Summary

Adenine Count

1000071 bp

Thymine Count

997316 bp

Guanine Count

2137658 bp

Cytosine Count

2142265 bp

Genome Length

6277310 bp

Protein-coding Genes

5721 genes

Non-Coding Genes

162 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
amidaseEZH22_03670B8J405Positive781151 - 78241643710.3
hypothetical proteinEZH22_03675Not AvailableNegative782436 - 7826999440.26
phosphonate abc transporter atp-binding proteinEZH22_03680Q132E8Positive782977 - 78378929117.4
phosphonate abc transporter substrate-binding proteinEZH22_03685A0QQ71Positive783875 - 78478333326.6
phosphonate abc transporter, permease protein phneEZH22_03690O69053Positive784941 - 78582532128.9
phosphonate abc transporter, permease protein phneEZH22_03695O69062Positive785822 - 78667930454.0
pyridoxamine 5'-phosphate oxidase family proteinEZH22_03700Not AvailableNegative786693 - 78731922647.2
phosphonate metabolism transcriptional regulator phnfEZH22_03705O86029Negative787375 - 78817828936.5
phosphonate c-p lyase system protein phngEZH22_03710Q52984Positive788315 - 78881217463.9
phosphonate c-p lyase system protein phnhEZH22_03715Q52985Positive788812 - 78942020422.6

Displaying genes 911 – 920 of 6290 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.