Xanthobacter dioxanivorans YN2

Gram-negative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Xanthobacteraceae

Genus

Xanthobacter

Description

Xanthobacter dioxanivorans YN2 is a Gram-negative bacterium notable for its ability to degrade dioxane, an emerging contaminant in groundwater. This species is characterized by the presence of flagella, which facilitate motility and can enhance its ability to colonize various environments. The genomic structure of X. dioxanivorans YN2 is distinguished by the presence of five replicons, indicating a complex genome organization that may contribute to its metabolic versatility. Each of these replicons may harbor essential genes involved in the bacterium's degradation pathways and survival mechanisms in diverse ecological niches. The accession numbers associated with the genome of Xanthobacter dioxanivorans YN2 are CP063362.1, CP063363.1, CP063364.1, CP063365.1, and CP063366.1. These sequences provide valuable resources for further research into the genetic and biochemical pathways that enable this organism to break down dioxane and potentially other xenobiotic compounds. The ecological significance of Xanthobacter dioxanivorans YN2 lies in its role in bioremediation. Its ability to metabolize harmful pollutants can contribute to the restoration of contaminated sites, highlighting the importance of such microorganisms in environmental microbiology and the development of sustainable remediation strategies.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyXanthobacteraceae
GenusXanthobacter
SpeciesXanthobacter dioxanivorans
StrainYN2

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Xanthobacter dioxanivorans YN2, Complete Genome

Gene Summary

Adenine Count

1000071 bp

Thymine Count

997316 bp

Guanine Count

2137658 bp

Cytosine Count

2142265 bp

Genome Length

6277310 bp

Protein-coding Genes

5721 genes

Non-Coding Genes

162 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
branched-chain amino acid abc transporter atp-binding protein/permeaseEZH22_02870P0A194Positive606078 - 60792865227.6
abc transporter atp-binding proteinEZH22_02875P21630Positive607912 - 60861625166.2
shikimate dehydrogenaseEZH22_02880Q1AWA3Positive608635 - 60948029257.6
sdr family oxidoreductaseEZH22_02885C0KTJ6Positive609477 - 61024126306.7
fad-binding oxidoreductaseEZH22_02890Q8N465Positive610297 - 61168547307.1
gmc family oxidoreductase n-terminal domain-containing proteinEZH22_02895B7N8L3Positive611727 - 61332857693.1
Ncrna_class:otherNot AvailableNot AvailablePositive613393 - 613547Not Available
5-formyltetrahydrofolate cyclo-ligaseEZH22_02905P0AC29Positive613574 - 61419121572.1
tigr00282 family metallophosphoesteraseEZH22_02910O31775Positive614246 - 61506728807.5
yebc/pmpr family dna-binding transcriptional regulatorEZH22_02915A7IJU9Positive615229 - 61597526904.7

Displaying genes 751 – 760 of 6290 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.