Xanthobacter dioxanivorans YN2

Gram-negative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Xanthobacteraceae

Genus

Xanthobacter

Description

Xanthobacter dioxanivorans YN2 is a Gram-negative bacterium notable for its ability to degrade dioxane, an emerging contaminant in groundwater. This species is characterized by the presence of flagella, which facilitate motility and can enhance its ability to colonize various environments. The genomic structure of X. dioxanivorans YN2 is distinguished by the presence of five replicons, indicating a complex genome organization that may contribute to its metabolic versatility. Each of these replicons may harbor essential genes involved in the bacterium's degradation pathways and survival mechanisms in diverse ecological niches. The accession numbers associated with the genome of Xanthobacter dioxanivorans YN2 are CP063362.1, CP063363.1, CP063364.1, CP063365.1, and CP063366.1. These sequences provide valuable resources for further research into the genetic and biochemical pathways that enable this organism to break down dioxane and potentially other xenobiotic compounds. The ecological significance of Xanthobacter dioxanivorans YN2 lies in its role in bioremediation. Its ability to metabolize harmful pollutants can contribute to the restoration of contaminated sites, highlighting the importance of such microorganisms in environmental microbiology and the development of sustainable remediation strategies.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyXanthobacteraceae
GenusXanthobacter
SpeciesXanthobacter dioxanivorans
StrainYN2

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Xanthobacter dioxanivorans YN2, Complete Genome

Gene Summary

Adenine Count

1000071 bp

Thymine Count

997316 bp

Guanine Count

2137658 bp

Cytosine Count

2142265 bp

Genome Length

6277310 bp

Protein-coding Genes

5721 genes

Non-Coding Genes

162 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
prepilin-type n-terminal cleavage/methylation domain-containing proteinEZH22_24075Not AvailableNegative5187969 - 518870325928.9
prepilin-type n-terminal cleavage/methylation domain-containing proteinEZH22_24080Not AvailableNegative5188700 - 518914014960.2
prepilin-type n-terminal cleavage/methylation domain-containing proteinEZH22_24085Not AvailableNegative5189118 - 518959416244.0
type ii secretion system major pseudopilin gspgEZH22_24090Q00514Negative5189609 - 519006716085.4
type ii secretion system f family proteinEZH22_24095P41441Negative5190248 - 519145942369.3
type ii/iv secretion system proteinEZH22_24100Q01566Negative5191465 - 519317760121.6
type ii secretion system secretin gspdEZH22_24105P29041Positive5193630 - 519591279165.2
hypothetical proteinEZH22_24110Not AvailablePositive5195920 - 519630612524.2
prepilin peptidaseEZH22_24115Q56740Positive5196225 - 519653311238.3
sel1 repeat family proteinEZH22_24120Not AvailablePositive5196606 - 519719620728.0

Displaying genes 4901 – 4910 of 6290 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.