Xanthobacter dioxanivorans YN2

Gram-negative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Xanthobacteraceae

Genus

Xanthobacter

Description

Xanthobacter dioxanivorans YN2 is a Gram-negative bacterium notable for its ability to degrade dioxane, an emerging contaminant in groundwater. This species is characterized by the presence of flagella, which facilitate motility and can enhance its ability to colonize various environments. The genomic structure of X. dioxanivorans YN2 is distinguished by the presence of five replicons, indicating a complex genome organization that may contribute to its metabolic versatility. Each of these replicons may harbor essential genes involved in the bacterium's degradation pathways and survival mechanisms in diverse ecological niches. The accession numbers associated with the genome of Xanthobacter dioxanivorans YN2 are CP063362.1, CP063363.1, CP063364.1, CP063365.1, and CP063366.1. These sequences provide valuable resources for further research into the genetic and biochemical pathways that enable this organism to break down dioxane and potentially other xenobiotic compounds. The ecological significance of Xanthobacter dioxanivorans YN2 lies in its role in bioremediation. Its ability to metabolize harmful pollutants can contribute to the restoration of contaminated sites, highlighting the importance of such microorganisms in environmental microbiology and the development of sustainable remediation strategies.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyXanthobacteraceae
GenusXanthobacter
SpeciesXanthobacter dioxanivorans
StrainYN2

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Xanthobacter dioxanivorans YN2, Complete Genome

Gene Summary

Adenine Count

1000071 bp

Thymine Count

997316 bp

Guanine Count

2137658 bp

Cytosine Count

2142265 bp

Genome Length

6277310 bp

Protein-coding Genes

5721 genes

Non-Coding Genes

162 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
pyrroloquinoline quinone biosynthesis protein pqqbEZH22_07565B0UE10Negative1600494 - 160139331511.8
pyrroloquinoline quinone precursor peptide pqqaEZH22_07570Q49148Negative1601436 - 16015132887.54
response regulator transcription factorEZH22_07575P0A5Z7Negative1601683 - 160238124905.1
hamp domain-containing proteinEZH22_07580Q9RQQ9Negative1602378 - 160400057185.8
protein-export chaperone secbEZH22_07585A7IGA7Negative1604200 - 160467917150.4
duf1674 domain-containing proteinEZH22_07590Q9VLU6Positive1605008 - 16052207433.61
undecaprenyl-diphosphate phosphataseEZH22_07595P58740Negative1605239 - 160604528794.2
glutathione s-transferase family proteinEZH22_07600A0A0H3CDY2Positive1606462 - 160715126144.3
trna epoxyqueuosine(34) reductase quegEZH22_07605F7ZDR3Positive1607148 - 160829940752.9
trna (n6-isopentenyl adenosine(37)-c2)-methylthiotransferase miabEZH22_07610A7IGB2Positive1608444 - 160982950405.1

Displaying genes 1691 – 1700 of 6290 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.