Xanthobacter dioxanivorans YN2

Gram-negative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Xanthobacteraceae

Genus

Xanthobacter

Description

Xanthobacter dioxanivorans YN2 is a Gram-negative bacterium notable for its ability to degrade dioxane, an emerging contaminant in groundwater. This species is characterized by the presence of flagella, which facilitate motility and can enhance its ability to colonize various environments. The genomic structure of X. dioxanivorans YN2 is distinguished by the presence of five replicons, indicating a complex genome organization that may contribute to its metabolic versatility. Each of these replicons may harbor essential genes involved in the bacterium's degradation pathways and survival mechanisms in diverse ecological niches. The accession numbers associated with the genome of Xanthobacter dioxanivorans YN2 are CP063362.1, CP063363.1, CP063364.1, CP063365.1, and CP063366.1. These sequences provide valuable resources for further research into the genetic and biochemical pathways that enable this organism to break down dioxane and potentially other xenobiotic compounds. The ecological significance of Xanthobacter dioxanivorans YN2 lies in its role in bioremediation. Its ability to metabolize harmful pollutants can contribute to the restoration of contaminated sites, highlighting the importance of such microorganisms in environmental microbiology and the development of sustainable remediation strategies.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyXanthobacteraceae
GenusXanthobacter
SpeciesXanthobacter dioxanivorans
StrainYN2

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Xanthobacter dioxanivorans YN2, Complete Genome

Gene Summary

Adenine Count

1000071 bp

Thymine Count

997316 bp

Guanine Count

2137658 bp

Cytosine Count

2142265 bp

Genome Length

6277310 bp

Protein-coding Genes

5721 genes

Non-Coding Genes

162 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nickel-dependent hydrogenase large subunitEZH22_05565P31914Positive1169126 - 116965017634.5
hydrogenase maturation nickel metallochaperone hypaEZH22_05570A7IHD3Positive1169643 - 116998412332.0
hydrogenase nickel incorporation protein hypbEZH22_05575P31880Positive1169984 - 117097334078.0
sigma-54-dependent fis family transcriptional regulatorEZH22_05580P26408Positive1170970 - 117244554773.8
hypc/hybg/hupf family hydrogenase formation chaperoneEZH22_05585P40428Positive1172708 - 117301010252.5
hydrogenase formation protein hypdEZH22_05590P26411Positive1173022 - 117414640258.8
hydrogenase expression/formation protein hypeEZH22_05595P26412Positive1174118 - 117521237591.8
hupe/urej family proteinEZH22_05600P27650Positive1175236 - 117583519665.6
phosphotransferaseEZH22_05605Q9RXC1Positive1175938 - 117691535903.1
carbonic anhydraseEZH22_05610Q50940Positive1177137 - 117788626491.7

Displaying genes 1291 – 1300 of 6290 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.