Novosphingobium humi R1-4

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Novosphingobium

Description

Novosphingobium humi R1-4 is characterized by the presence of flagella, which is an important trait for mobility and potential environmental adaptation. This bacterium contains a total of four replicons, indicating a complex genomic structure that may support diverse metabolic capabilities and resilience in various ecological niches. The genomic sequences of Novosphingobium humi R1-4 are cataloged under several accessions: CP117417.1, CP117418.1, CP117419.1, and CP117420.1. These sequences can provide insights into the genetic makeup and functional potential of this species, allowing for a better understanding of its role in its habitat. The presence of flagella suggests that Novosphingobium humi R1-4 may actively navigate its environment, which could be significant in the context of its ecological interactions. The ability to move towards or away from certain stimuli could enhance its survival and competitiveness in diverse microbial communities. Additionally, the four replicons may afford the organism a greater genetic flexibility, potentially enabling it to adapt to varied environmental conditions or substrates. In summary, Novosphingobium humi R1-4 is a motile bacterium with a complex genomic architecture, which could contribute to its ecological versatility and adaptability in microbial ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusNovosphingobium
SpeciesNovosphingobium humi
StrainR1-4

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Novosphingobium humi R1-4, Complete Genome

Gene Summary

Adenine Count

624047 bp

Thymine Count

625173 bp

Guanine Count

1097387 bp

Cytosine Count

1092600 bp

Genome Length

3439207 bp

Protein-coding Genes

3068 genes

Non-Coding Genes

159 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
1-deoxy-d-xylulose-5-phosphate synthasePQ457_14440Q2GC13Positive3065723 - 306766669011.9
duf2141 domain-containing proteinPQ457_14445Not AvailablePositive3067663 - 306810315383.4
abc transporter substrate-binding proteinPQ457_14450Not AvailableNegative3068190 - 306881621535.9
4-hydroxy-3-methylbut-2-enyl diphosphate reductasePQ457_14455Q5NP61Positive3069099 - 307006133820.3
adenosyl-hopene transferase hpnhPQ457_14460Q7TX84Positive3070085 - 307123042326.0
phosphorylasePQ457_14465B6EKZ7Negative3071302 - 307197924000.3
squalene--hopene cyclasePQ457_14470P33990Negative3071967 - 307390471604.2
hydroxysqualene dehydroxylase hpnePQ457_14475Q6N3F3Negative3073901 - 307517244534.4
presqualene diphosphate synthase hpndPQ457_14480H2VFR7Negative3075173 - 307603331429.1
squalene synthase hpncPQ457_14485Q5NP67Negative3076030 - 307690531914.4

Displaying genes 2891 – 2900 of 4435 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.