Novosphingobium humi R1-4

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Novosphingobium

Description

Novosphingobium humi R1-4 is characterized by the presence of flagella, which is an important trait for mobility and potential environmental adaptation. This bacterium contains a total of four replicons, indicating a complex genomic structure that may support diverse metabolic capabilities and resilience in various ecological niches. The genomic sequences of Novosphingobium humi R1-4 are cataloged under several accessions: CP117417.1, CP117418.1, CP117419.1, and CP117420.1. These sequences can provide insights into the genetic makeup and functional potential of this species, allowing for a better understanding of its role in its habitat. The presence of flagella suggests that Novosphingobium humi R1-4 may actively navigate its environment, which could be significant in the context of its ecological interactions. The ability to move towards or away from certain stimuli could enhance its survival and competitiveness in diverse microbial communities. Additionally, the four replicons may afford the organism a greater genetic flexibility, potentially enabling it to adapt to varied environmental conditions or substrates. In summary, Novosphingobium humi R1-4 is a motile bacterium with a complex genomic architecture, which could contribute to its ecological versatility and adaptability in microbial ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusNovosphingobium
SpeciesNovosphingobium humi
StrainR1-4

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Novosphingobium humi R1-4, Complete Genome

Gene Summary

Adenine Count

624047 bp

Thymine Count

625173 bp

Guanine Count

1097387 bp

Cytosine Count

1092600 bp

Genome Length

3439207 bp

Protein-coding Genes

3068 genes

Non-Coding Genes

159 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
porphobilinogen synthasePQ457_00140Q59643Negative25010 - 2601735865.9
atp-dependent clp protease atp-binding subunit clpaPQ457_00145P05444Negative26111 - 2851687814.2
duf1192 domain-containing proteinPQ457_00150Not AvailableNegative28665 - 289108533.88
nad(p)h-quinone oxidoreductasePQ457_00155Q53FA7Positive29005 - 3000935349.9
glutathione s-transferase family proteinPQ457_00160Q52828Positive30297 - 3092923576.3
duf1013 domain-containing proteinPQ457_00165Not AvailablePositive31088 - 3178925490.1
mmcb family dna repair proteinPQ457_00170Not AvailableNegative32118 - 3261218144.1
hypothetical proteinPQ457_00175Not AvailableNegative32654 - 3304613457.0
Trna-argNot AvailableNot AvailablePositive33166 - 33242Not Available
beta-3-deoxy-d-manno-oct-2-ulosonic acid transferasePQ457_00185P57037Negative33267 - 3493159376.7

Displaying genes 171 – 180 of 4435 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.