Chitinophaga caseinilytica S-52

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Chitinophagia

Order

Chitinophagales

Family

Chitinophagaceae

Genus

Chitinophaga

Description

Chitinophaga caseinilytica S-52 is a Gram-negative bacterium characterized by its rod-shaped morphology. This species is notable for possessing two replicons, which can indicate a complex genomic organization. The genomic information for Chitinophaga caseinilytica S-52 is available in the form of accessions CP150096.1 and CP149792.1. Chitinophaga caseinilytica S-52 is part of a genus known for its role in the degradation of chitin and other complex organic matter, suggesting its potential importance in nutrient cycling within its ecological niche. The ability to break down chitin, a major component of fungal cell walls and exoskeletons of arthropods, positions this bacterium as a significant player in soil and aquatic ecosystems where chitin is abundant. Understanding the traits and genomic structure of Chitinophaga caseinilytica S-52 can provide insights into its ecological roles, particularly in the decomposition processes and the recycling of nutrients. This knowledge is critical for appreciating the complex interactions within microbial communities, especially those involved in organic matter turnover and soil health.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassChitinophagia
OrderChitinophagales
FamilyChitinophagaceae
GenusChitinophaga
SpeciesChitinophaga caseinilytica
StrainS-52

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Chitinophaga caseinilytica S-52, Complete Genome

Gene Summary

Adenine Count

1469136 bp

Thymine Count

1466111 bp

Guanine Count

1791457 bp

Cytosine Count

1790996 bp

Genome Length

6517700 bp

Protein-coding Genes

5362 genes

Non-Coding Genes

79 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
outer membrane beta-barrel proteinWJU22_03760Not AvailableNegative881452 - 88239935456.9
hypothetical proteinWJU22_03765Not AvailableNegative882432 - 88348437302.9
rna polymerase sigma factorWJU22_03770A0R2D4Negative883510 - 88399519096.9
50s ribosomal protein l5WJU22_03775P0AB78Positive884365 - 88483517480.7
aminotransferase class i/ii-fold pyridoxal phosphate-dependent enzymeWJU22_03780P0AB78Positive884897 - 88556824105.2
penicillin-binding transpeptidase domain-containing proteinWJU22_03785Q00982Positive885709 - 88647328689.4
vwa domain-containing proteinWJU22_03790O51195Positive886582 - 88762238697.1
tetratricopeptide repeat proteinWJU22_03795Not AvailablePositive887619 - 88837128819.7
yitt family proteinWJU22_03800P94357Positive888399 - 88923530263.7
helix-turn-helix domain-containing proteinWJU22_03805P54722Negative889399 - 89025933744.9

Displaying genes 751 – 760 of 3712 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.