Chitinophaga caseinilytica S-52

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Chitinophagia

Order

Chitinophagales

Family

Chitinophagaceae

Genus

Chitinophaga

Description

Chitinophaga caseinilytica S-52 is a Gram-negative bacterium characterized by its rod-shaped morphology. This species is notable for possessing two replicons, which can indicate a complex genomic organization. The genomic information for Chitinophaga caseinilytica S-52 is available in the form of accessions CP150096.1 and CP149792.1. Chitinophaga caseinilytica S-52 is part of a genus known for its role in the degradation of chitin and other complex organic matter, suggesting its potential importance in nutrient cycling within its ecological niche. The ability to break down chitin, a major component of fungal cell walls and exoskeletons of arthropods, positions this bacterium as a significant player in soil and aquatic ecosystems where chitin is abundant. Understanding the traits and genomic structure of Chitinophaga caseinilytica S-52 can provide insights into its ecological roles, particularly in the decomposition processes and the recycling of nutrients. This knowledge is critical for appreciating the complex interactions within microbial communities, especially those involved in organic matter turnover and soil health.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassChitinophagia
OrderChitinophagales
FamilyChitinophagaceae
GenusChitinophaga
SpeciesChitinophaga caseinilytica
StrainS-52

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Chitinophaga caseinilytica S-52, Complete Genome

Gene Summary

Adenine Count

1469136 bp

Thymine Count

1466111 bp

Guanine Count

1791457 bp

Cytosine Count

1790996 bp

Genome Length

6517700 bp

Protein-coding Genes

5362 genes

Non-Coding Genes

79 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lptf/lptg family permeaseWJU22_00010Not AvailableNegative305 - 138441257.6
trna guanosine(34) transglycosylase tgtWJU22_00015B0K959Negative1486 - 261341980.6
glycosyltransferaseWJU22_00020Q8XAR5Positive2783 - 392243904.4
16s rrna (guanine(527)-n(7))-methyltransferase rsmgWJU22_00025Q8A8M2Positive3924 - 454122942.0
cation diffusion facilitator family transporterWJU22_00030A7Z1S6Negative4542 - 544131694.9
rna polymerase sigma factorWJU22_00035P66808Positive5552 - 611221699.8
hypothetical proteinWJU22_00040Not AvailablePositive6117 - 649414750.2
hypothetical proteinWJU22_00045Not AvailablePositive6521 - 67639028.04
dinb family proteinWJU22_00050Not AvailablePositive6777 - 733721955.4
rna polymerase sigma-70 factorWJU22_00055Q7AKG9Positive7429 - 799521219.4

Displaying genes 1 – 10 of 3712 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.