Chitinophaga caseinilytica S-52

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Chitinophagia

Order

Chitinophagales

Family

Chitinophagaceae

Genus

Chitinophaga

Description

Chitinophaga caseinilytica S-52 is a Gram-negative bacterium characterized by its rod-shaped morphology. This species is notable for possessing two replicons, which can indicate a complex genomic organization. The genomic information for Chitinophaga caseinilytica S-52 is available in the form of accessions CP150096.1 and CP149792.1. Chitinophaga caseinilytica S-52 is part of a genus known for its role in the degradation of chitin and other complex organic matter, suggesting its potential importance in nutrient cycling within its ecological niche. The ability to break down chitin, a major component of fungal cell walls and exoskeletons of arthropods, positions this bacterium as a significant player in soil and aquatic ecosystems where chitin is abundant. Understanding the traits and genomic structure of Chitinophaga caseinilytica S-52 can provide insights into its ecological roles, particularly in the decomposition processes and the recycling of nutrients. This knowledge is critical for appreciating the complex interactions within microbial communities, especially those involved in organic matter turnover and soil health.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassChitinophagia
OrderChitinophagales
FamilyChitinophagaceae
GenusChitinophaga
SpeciesChitinophaga caseinilytica
StrainS-52

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Chitinophaga caseinilytica S-52, Complete Genome

Gene Summary

Adenine Count

1469136 bp

Thymine Count

1466111 bp

Guanine Count

1791457 bp

Cytosine Count

1790996 bp

Genome Length

6517700 bp

Protein-coding Genes

5362 genes

Non-Coding Genes

79 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dna polymerase iii subunit betaWJ748_12265Q9I7C4Negative2839063 - 284018141653.1
aminotransferase class i/ii-fold pyridoxal phosphate-dependent enzymeWJ748_12270E9L7A5Positive2840470 - 284172946859.5
tetr/acrr family transcriptional regulatorWJ748_12275Q9AIU0Positive2842427 - 284303523337.0
tetr/acrr family transcriptional regulatorWJ748_12280O32228Positive2843037 - 284364523245.0
tolc family proteinWJ748_12285Q9K2Y1Positive2843668 - 284502950967.6
efflux rnd transporter periplasmic adaptor subunitWJ748_12290Q57500Positive2845038 - 284610238724.5
efflux rnd transporter permease subunitWJ748_12295P25197Positive2846132 - 2849326116617.0
pyrroline-5-carboxylate reductaseWJ748_12300Q54IL7Negative2849445 - 285024528042.1
hnh endonucleaseWJ748_12305Q5UPT4Negative2850385 - 285095422206.9
trna dihydrouridine synthase dusbWJ748_12310Q4UNJ4Negative2850989 - 285205939862.5

Displaying genes 3581 – 3590 of 3712 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.