Vibrio japonicus

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio japonicus is a bacterium characterized by the presence of three replicons. The specific genetic material of this organism can be referenced in several accession numbers: CP102096.1, CP102097.1, and CP102098.1. These replicons may correspond to different components of its genome, potentially including a chromosome and one or more plasmids, which can play crucial roles in its adaptability and survival. As a member of the Vibrio genus, V. japonicus is likely to inhabit marine environments, where it can be involved in various ecological interactions. Its genetic structure, indicated by the multiple replicons, suggests an evolutionary advantage that may facilitate the acquisition of genes related to environmental adaptation, pathogenicity, or resistance to antimicrobial agents. This genetic versatility could be significant for its survival in fluctuating marine ecosystems. In summary, the tripartite replicon structure of Vibrio japonicus, as demonstrated by its genomic accessions, may contribute to its ecological dynamics and interactions within marine habitats. Understanding these traits is essential for insights into the bacterium's role in microbial communities and its potential impacts on marine health and safety.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio japonicus
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio japonicus
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Vibrio japonicus


Gene Summary

Adenine Count

761783 bp

Thymine Count

763209 bp

Guanine Count

628377 bp

Cytosine Count

630183 bp

Genome Length

2783552 bp

Protein-coding Genes

2501 genes

Non-Coding Genes

152 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
4-(cytidine 5'-diphospho)-2-c-methyl-d-erythritol kinaseNP165_03855Q87RN7Negative787321 - 78819331801.6
lipoprotein insertase outer membrane protein lolbNP165_03860A7MY80Negative788190 - 78880723057.4
glutamyl-trna reductaseNP165_03865B7VKH2Positive788968 - 79022145539.9
peptide chain release factor 1NP165_03870A7MY68Positive790267 - 79135540270.3
peptide chain release factor n(5)-glutamine methyltransferaseNP165_03875Q9KQ26Positive791359 - 79221931702.3
sirb2 family proteinNP165_03880P0A238Positive792231 - 79261414122.9
sirb1 family proteinNP165_03885Q9KQ28Positive792633 - 79344230899.6
3-deoxy-8-phosphooctulonate synthaseNP165_03890A5F692Positive793490 - 79434130798.3
bifunctional udp-sugar hydrolase/5'-nucleotidase ushaNP165_03895Q8DFG4Positive794723 - 79638461054.2
cys-trna(pro) deacylaseNP165_03900P37174Positive796491 - 79696416764.6

Displaying genes 771 – 780 of 3997 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.