Vibrio japonicus

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio japonicus is a bacterium characterized by the presence of three replicons. The specific genetic material of this organism can be referenced in several accession numbers: CP102096.1, CP102097.1, and CP102098.1. These replicons may correspond to different components of its genome, potentially including a chromosome and one or more plasmids, which can play crucial roles in its adaptability and survival. As a member of the Vibrio genus, V. japonicus is likely to inhabit marine environments, where it can be involved in various ecological interactions. Its genetic structure, indicated by the multiple replicons, suggests an evolutionary advantage that may facilitate the acquisition of genes related to environmental adaptation, pathogenicity, or resistance to antimicrobial agents. This genetic versatility could be significant for its survival in fluctuating marine ecosystems. In summary, the tripartite replicon structure of Vibrio japonicus, as demonstrated by its genomic accessions, may contribute to its ecological dynamics and interactions within marine habitats. Understanding these traits is essential for insights into the bacterium's role in microbial communities and its potential impacts on marine health and safety.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio japonicus
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio japonicus
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Vibrio japonicus


Gene Summary

Adenine Count

3324 bp

Thymine Count

2614 bp

Guanine Count

3820 bp

Cytosine Count

3879 bp

Genome Length

13637 bp

Protein-coding Genes

13 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
chromosomal replication initiator protein dnaaNP165_00005A7N1E9Positive1 - 140753136.3
dna polymerase iii subunit betaNP165_00010Q9KVX5Positive1501 - 260140726.8
dna replication/repair protein recfNP165_00015Q87TQ5Positive2603 - 368541015.9
dna topoisomerase (atp-hydrolyzing) subunit bNP165_00020O51859Positive3699 - 611689623.4
grea/greb family elongation factorNP165_00025Q181F4Positive6467 - 688316157.6
hsp20 family proteinNP165_00030Q6CYV2Positive7304 - 774116696.7
valine--pyruvate transaminaseNP165_00035P09053Negative7801 - 905146369.7
glycine--trna ligase subunit betaNP165_00040Q87TP8Negative9239 - 1130576065.2
glycine--trna ligase subunit alphaNP165_00045A7N1D9Negative11319 - 1223935080.6
tmem165/gdt1 family proteinNP165_00050A0A0H3AJF5Positive12720 - 1327719642.5

Displaying genes 1 – 10 of 3997 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.