Vibrio japonicus

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio japonicus is a bacterium characterized by the presence of three replicons. The specific genetic material of this organism can be referenced in several accession numbers: CP102096.1, CP102097.1, and CP102098.1. These replicons may correspond to different components of its genome, potentially including a chromosome and one or more plasmids, which can play crucial roles in its adaptability and survival. As a member of the Vibrio genus, V. japonicus is likely to inhabit marine environments, where it can be involved in various ecological interactions. Its genetic structure, indicated by the multiple replicons, suggests an evolutionary advantage that may facilitate the acquisition of genes related to environmental adaptation, pathogenicity, or resistance to antimicrobial agents. This genetic versatility could be significant for its survival in fluctuating marine ecosystems. In summary, the tripartite replicon structure of Vibrio japonicus, as demonstrated by its genomic accessions, may contribute to its ecological dynamics and interactions within marine habitats. Understanding these traits is essential for insights into the bacterium's role in microbial communities and its potential impacts on marine health and safety.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio japonicus
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio japonicus
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Vibrio japonicus , Complete Genome

Gene Summary

Adenine Count

761783 bp

Thymine Count

763209 bp

Guanine Count

628377 bp

Cytosine Count

630183 bp

Genome Length

2783552 bp

Protein-coding Genes

2501 genes

Non-Coding Genes

152 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
serine hydroxymethyltransferaseNP165_15860Q7MEH7Positive592649 - 59394446527.8
glycine cleavage system protein gcvhNP165_15865A7N5C3Positive593981 - 59436113934.8
aminomethyl-transferring glycine dehydrogenaseNP165_15870A7N5C4Positive594485 - 597349104636.0
hypothetical proteinNP165_15875Not AvailablePositive597786 - 59825617720.0
duf2999 domain-containing proteinNP165_15880Not AvailablePositive598499 - 5987509195.4
fad-binding oxidoreductaseNP165_15885Q54H55Positive599144 - 60052950507.7
flavohemoglobin expression-modulating qegla motif proteinNP165_15890Not AvailableNegative600603 - 60261877175.6
glutathione synthaseNP165_15895P45480Negative602599 - 60363938674.9
duf413 domain-containing proteinNP165_15900P31811Negative603636 - 60398613305.2
glutamate synthase-related proteinNP165_15905O87392Negative604238 - 60579455489.4

Displaying genes 3171 – 3180 of 3997 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.