Vibrio japonicus

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio japonicus is a bacterium characterized by the presence of three replicons. The specific genetic material of this organism can be referenced in several accession numbers: CP102096.1, CP102097.1, and CP102098.1. These replicons may correspond to different components of its genome, potentially including a chromosome and one or more plasmids, which can play crucial roles in its adaptability and survival. As a member of the Vibrio genus, V. japonicus is likely to inhabit marine environments, where it can be involved in various ecological interactions. Its genetic structure, indicated by the multiple replicons, suggests an evolutionary advantage that may facilitate the acquisition of genes related to environmental adaptation, pathogenicity, or resistance to antimicrobial agents. This genetic versatility could be significant for its survival in fluctuating marine ecosystems. In summary, the tripartite replicon structure of Vibrio japonicus, as demonstrated by its genomic accessions, may contribute to its ecological dynamics and interactions within marine habitats. Understanding these traits is essential for insights into the bacterium's role in microbial communities and its potential impacts on marine health and safety.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio japonicus
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio japonicus
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Vibrio japonicus , Complete Genome

Gene Summary

Adenine Count

761783 bp

Thymine Count

763209 bp

Guanine Count

628377 bp

Cytosine Count

630183 bp

Genome Length

2783552 bp

Protein-coding Genes

2501 genes

Non-Coding Genes

152 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
glycerol-3-phosphate 1-o-acyltransferase plsyNP165_11105B7VIV7Positive2372503 - 237311421815.6
alpha/beta hydrolaseNP165_11110P00632Negative2373150 - 237396530316.3
trna (adenosine(37)-n6)-threonylcarbamoyltransferase complex transferase subunit tsadNP165_11115Q87SL5Negative2374088 - 237510436197.9
30s ribosomal protein s21NP165_11120A7MWP7Positive2375335 - 23755508487.44
gatb/yqey domain-containing proteinNP165_11125P54464Positive2375577 - 237602015940.5
dna primaseNP165_11130Q9CLI9Positive2376115 - 237787266613.6
rna polymerase sigma factor rpodNP165_11135P0A2E4Positive2377971 - 237983370553.5
Trna-metNot AvailableNot AvailablePositive2379988 - 2380063Not Available
site-specific integraseNP165_11145P10487Positive2380162 - 238125341090.9
hypothetical proteinNP165_11150Not AvailableNegative2381464 - 238194617684.3

Displaying genes 2221 – 2230 of 3997 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.