Vibrio japonicus

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio japonicus is a bacterium characterized by the presence of three replicons. The specific genetic material of this organism can be referenced in several accession numbers: CP102096.1, CP102097.1, and CP102098.1. These replicons may correspond to different components of its genome, potentially including a chromosome and one or more plasmids, which can play crucial roles in its adaptability and survival. As a member of the Vibrio genus, V. japonicus is likely to inhabit marine environments, where it can be involved in various ecological interactions. Its genetic structure, indicated by the multiple replicons, suggests an evolutionary advantage that may facilitate the acquisition of genes related to environmental adaptation, pathogenicity, or resistance to antimicrobial agents. This genetic versatility could be significant for its survival in fluctuating marine ecosystems. In summary, the tripartite replicon structure of Vibrio japonicus, as demonstrated by its genomic accessions, may contribute to its ecological dynamics and interactions within marine habitats. Understanding these traits is essential for insights into the bacterium's role in microbial communities and its potential impacts on marine health and safety.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio japonicus
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio japonicus
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Vibrio japonicus , Complete Genome

Gene Summary

Adenine Count

761783 bp

Thymine Count

763209 bp

Guanine Count

628377 bp

Cytosine Count

630183 bp

Genome Length

2783552 bp

Protein-coding Genes

2501 genes

Non-Coding Genes

152 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
cell division protein zapdNP165_11005A5F5K1Positive2357444 - 235818428680.3
dna gyrase inhibitor yacgNP165_11010Q7MHT4Positive2358242 - 23584367164.17
50s ribosomal protein l19NP165_11015Q5E7E9Negative2358638 - 235899113274.2
trna (guanosine(37)-n1)-methyltransferase trmdNP165_11020Q8CWK5Negative2359033 - 235977627974.6
ribosome maturation factor rimmNP165_11025A7MYV0Negative2359801 - 236034920935.9
30s ribosomal protein s16NP165_11030Q87LS8Negative2360376 - 23606249077.95
signal recognition particle proteinNP165_11035P0AGD9Negative2360821 - 236220350329.9
inner membrane protein ypjdNP165_11040P64434Positive2362413 - 236320729415.1
cnnm domain-containing proteinNP165_11045P37908Positive2363328 - 236460547410.3
rna polymerase sigma factor rposNP165_11050O51804Negative2364674 - 236563636652.9

Displaying genes 2201 – 2210 of 3997 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.