Rhizobium indigoferae

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Rhizobium

Description

Rhizobium indigoferae is a rod-shaped bacterium that possesses flagella, enabling motility. This species is characterized by having five distinct replicons, which are essential for its genetic organization and replication processes. The presence of multiple replicons may contribute to its adaptability and survival in various environmental conditions. The organism is documented in several genetic accessions, including CP140635.1, CP140639.1, CP140636.1, CP140638.1, and CP140637.1, highlighting its genetic diversity and potential for further study. These accessions provide a valuable resource for researchers interested in the genomic features and evolutionary relationships of R. indigoferae. In terms of ecological significance, Rhizobium indigoferae is known to form symbiotic relationships with leguminous plants, a critical interaction that enhances nitrogen fixation in soil. This function is vital for maintaining soil fertility and promoting plant growth, which is particularly important in agricultural systems. Thus, R. indigoferae contributes not only to its own ecosystem but also plays a significant role in supporting sustainable agricultural practices.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusRhizobium
SpeciesRhizobium indigoferae
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Rhizobium indigoferae
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhizobium indigoferae , Complete Genome

Gene Summary

Adenine Count

954016 bp

Thymine Count

946764 bp

Guanine Count

1461616 bp

Cytosine Count

1501114 bp

Genome Length

4863510 bp

Protein-coding Genes

4703 genes

Non-Coding Genes

68 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ligase-associated dna damage response exonucleaseU5G49_000921B1ZZL9Positive900939 - 90194937310.8
cisplatin damage response atp-dependent dna ligaseU5G49_000922Q1II25Positive902001 - 90362661154.6
alpha/beta fold hydrolaseU5G49_000923P39839Positive903740 - 90466034058.6
hypothetical proteinU5G49_000924Not AvailablePositive904731 - 9049347757.26
l,d-transpeptidaseU5G49_000925P05448Positive905203 - 90600930028.1
l,d-transpeptidase family proteinU5G49_000926P54539Positive906186 - 90692026917.2
cold-shock proteinU5G49_000927Q9Z3S6Positive907227 - 9074367587.95
cold-shock proteinU5G49_000928Not AvailablePositive907712 - 90799610461.4
30s ribosomal protein s21U5G49_000929Q1MJR4Positive908056 - 9082929310.69
hypothetical proteinU5G49_000930Not AvailablePositive908523 - 9087478084.64

Displaying genes 921 – 930 of 5953 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.