Rhizobium indigoferae

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Rhizobium

Description

Rhizobium indigoferae is a rod-shaped bacterium that possesses flagella, enabling motility. This species is characterized by having five distinct replicons, which are essential for its genetic organization and replication processes. The presence of multiple replicons may contribute to its adaptability and survival in various environmental conditions. The organism is documented in several genetic accessions, including CP140635.1, CP140639.1, CP140636.1, CP140638.1, and CP140637.1, highlighting its genetic diversity and potential for further study. These accessions provide a valuable resource for researchers interested in the genomic features and evolutionary relationships of R. indigoferae. In terms of ecological significance, Rhizobium indigoferae is known to form symbiotic relationships with leguminous plants, a critical interaction that enhances nitrogen fixation in soil. This function is vital for maintaining soil fertility and promoting plant growth, which is particularly important in agricultural systems. Thus, R. indigoferae contributes not only to its own ecosystem but also plays a significant role in supporting sustainable agricultural practices.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusRhizobium
SpeciesRhizobium indigoferae
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Rhizobium indigoferae
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhizobium indigoferae , Complete Genome

Gene Summary

Adenine Count

954016 bp

Thymine Count

946764 bp

Guanine Count

1461616 bp

Cytosine Count

1501114 bp

Genome Length

4863510 bp

Protein-coding Genes

4703 genes

Non-Coding Genes

68 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
methionyl-trna formyltransferaseU5G49_000062B5ZN20Positive60977 - 6191233316.6
trna pseudouridine(38-40) synthase truaU5G49_000063B5ZN21Positive61912 - 6271229543.0
hypothetical proteinU5G49_000064Not AvailableNegative62738 - 6333422518.6
succinyl-diaminopimelate desuccinylaseU5G49_000065Q1MM75Negative63321 - 6451442287.2
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate n-succinyltransferaseU5G49_000066Q1MM74Negative64616 - 6547630421.3
log family proteinU5G49_000067Q8L8B8Positive65669 - 6653532402.9
ef-hand domain-containing proteinU5G49_000068Not AvailableNegative66781 - 6740722873.9
pyrimidine 5'-nucleotidaseU5G49_000069Q09893Negative67581 - 6830627330.6
trifunctional transcriptional activator/dna repair protein ada/methylated-dna--[protein]-cysteine s-methyltransferaseU5G49_000070P06134Positive68409 - 6948240131.1
isocitrate lyase/phosphoenolpyruvate mutase family proteinU5G49_000071P9WLN8Positive69479 - 7024926592.2

Displaying genes 61 – 70 of 5953 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.