Rhizobium indigoferae

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Rhizobium

Description

Rhizobium indigoferae is a rod-shaped bacterium that possesses flagella, enabling motility. This species is characterized by having five distinct replicons, which are essential for its genetic organization and replication processes. The presence of multiple replicons may contribute to its adaptability and survival in various environmental conditions. The organism is documented in several genetic accessions, including CP140635.1, CP140639.1, CP140636.1, CP140638.1, and CP140637.1, highlighting its genetic diversity and potential for further study. These accessions provide a valuable resource for researchers interested in the genomic features and evolutionary relationships of R. indigoferae. In terms of ecological significance, Rhizobium indigoferae is known to form symbiotic relationships with leguminous plants, a critical interaction that enhances nitrogen fixation in soil. This function is vital for maintaining soil fertility and promoting plant growth, which is particularly important in agricultural systems. Thus, R. indigoferae contributes not only to its own ecosystem but also plays a significant role in supporting sustainable agricultural practices.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusRhizobium
SpeciesRhizobium indigoferae
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Rhizobium indigoferae
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhizobium indigoferae , Complete Genome

Gene Summary

Adenine Count

954016 bp

Thymine Count

946764 bp

Guanine Count

1461616 bp

Cytosine Count

1501114 bp

Genome Length

4863510 bp

Protein-coding Genes

4703 genes

Non-Coding Genes

68 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
3-oxo-isoapionate-4-phosphate decarboxylase oiaxU5G49_005398Q2JZQ0Positive86395 - 8765144939.1
four-carbon acid sugar kinase family proteinU5G49_005399B1G889Positive87657 - 8899447181.3
phosphogluconate dehydrogenase c-terminal domain-containing proteinU5G49_005400B9JK75Positive89128 - 8995529753.3
d-ribose abc transporter substrate-binding proteinU5G49_005401Q2JZQ5Positive90056 - 9099733011.2
duf2291 domain-containing proteinU5G49_005402Not AvailablePositive91071 - 9171522453.8
sugar abc transporter atp-binding proteinU5G49_005403Q7UU57Positive91712 - 9326255910.9
abc transporter permeaseU5G49_005404P36948Positive93259 - 9432336991.9
gfo/idh/moca family oxidoreductaseU5G49_005405B9JK80Positive94325 - 9535937900.9
hypothetical proteinU5G49_005406A6X3G3Positive95356 - 9723668289.1
dihydroxyacetone kinase subunit dhakU5G49_005407Q92EU2Positive97293 - 9829735763.4

Displaying genes 4841 – 4850 of 5953 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.