Simiduia litorea

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Cellvibrionales

Family

Cellvibrionaceae

Genus

Simiduia

Description

Simiduia litorea is a Gram-negative bacterium characterized by its rod shape. It has a single replicon, indicating a streamlined genetic structure. The organism is cataloged under the accession number AP031497.1, which provides a reference for researchers interested in its genetic and functional characteristics. As a Gram-negative bacterium, Simiduia litorea possesses a thin peptidoglycan layer surrounded by an outer membrane, a distinctive feature that influences its interactions with the environment and susceptibility to certain antibiotics. The rod shape may confer advantages in motility and nutrient acquisition, allowing it to thrive in specific ecological niches. Understanding the traits of Simiduia litorea can provide insights into its role in microbial ecosystems. Gram-negative bacteria often play critical roles in nutrient cycling and can be involved in various ecological processes, such as decomposition and symbiosis. The presence of a single replicon suggests a potential adaptability and efficiency in resource utilization, which may be beneficial in fluctuating environmental conditions. Overall, the study of Simiduia litorea contributes to the broader understanding of microbial diversity and functionality in ecosystems. Its Gram-negative nature and rod shape are essential traits that may influence its ecological interactions and evolutionary strategies.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderCellvibrionales
FamilyCellvibrionaceae
GenusSimiduia
SpeciesSimiduia litorea
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Simiduia litorea , Complete Genome

Gene Summary

Adenine Count

1116779 bp

Thymine Count

1113420 bp

Guanine Count

1099759 bp

Cytosine Count

1099259 bp

Genome Length

4429217 bp

Protein-coding Genes

3970 genes

Non-Coding Genes

59 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lipoyl synthaseR50072_28780B1J144Negative3273785 - 327480137976.7
lipoyl(octanoyl) transferase lipbR50072_28790B3PKN9Negative3274841 - 327553925448.7
duf493 domain-containing proteinR50072_28800A6V0B2Negative3275540 - 327581210072.4
d-alanyl-d-alanine carboxypeptidase family proteinR50072_28810P0AEB4Negative3275941 - 327712242566.9
septal ring lytic transglycosylase rlpa family proteinR50072_28820A0A0H2ZFV1Negative3277246 - 327819634665.0
lytic murein transglycosylase bR50072_28830P41052Negative3278193 - 327917036233.9
rod shape-determining protein rodaR50072_28840P44468Negative3279292 - 328044041679.7
penicillin-binding protein 2R50072_28850P0AD67Negative3280437 - 328232069873.4
23s rrna (pseudouridine(1915)-n(3))-methyltransferase rlmhR50072_28860B3PKN1Negative3282418 - 328288517218.8
ribosome silencing factorR50072_28870Q02SH2Negative3282885 - 328322312499.1

Displaying genes 2931 – 2940 of 4029 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.