Rhodococcus qingshengii djl-6

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Nocardiaceae

Genus

Rhodococcus

Description

Rhodococcus qingshengii djl-6 is a notable bacterium characterized by the presence of flagella, which suggests that it is motile. This motility could play a significant role in its ecological interactions and ability to colonize various environments. The genome of R. qingshengii djl-6 consists of six replicons, indicating a complex genetic architecture that may contribute to its adaptability and metabolic versatility. The genomic data for R. qingshengii djl-6 are recorded under several accessions: CP096563.1, CP096564.1, CP096565.1, CP096566.1, CP096567.1, and CP096568.1. These accessions provide a foundation for further genetic and functional analysis of this species. Given its motility and genomic complexity, R. qingshengii djl-6 may be well-suited for diverse ecological niches, potentially allowing it to engage in various biogeochemical processes. The presence of multiple replicons is often associated with the ability to metabolize a wide range of substrates, which could enhance its survival and ecological role in environments where it is found. Understanding these traits can provide insights into the ecological dynamics of Rhodococcus species and their potential applications in bioremediation or other biotechnological fields.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyNocardiaceae
GenusRhodococcus
SpeciesRhodococcus qingshengii
Straindjl-6

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhodococcus qingshengii djl-6, Complete Genome

Gene Summary

Adenine Count

1203420 bp

Thymine Count

1200213 bp

Guanine Count

1997177 bp

Cytosine Count

2004292 bp

Genome Length

6405102 bp

Protein-coding Genes

5831 genes

Non-Coding Genes

86 genes

# of Chromosomes/Plasmids

6

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
shikimate kinaseM0639_13950C0ZZB5Positive3019047 - 301955618698.6
3-dehydroquinate synthaseM0639_13955C0ZZB6Positive3019582 - 302069138936.1
type ii 3-dehydroquinate dehydrataseM0639_13960P0A4Z7Positive3020688 - 302111615131.1
b-4dmt family transporterM0639_13965Not AvailableNegative3021204 - 302181221883.4
xaa-pro peptidase family proteinM0639_13970P54518Positive3021924 - 302301838979.3
elongation factor pM0639_13975C0ZZC0Positive3023053 - 302361620524.3
transcription antitermination factor nusbM0639_13980C0ZZC1Positive3023617 - 302411417707.9
bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase pyrrM0639_13985Q741H6Positive3024288 - 302492922753.2
aspartate carbamoyltransferase catalytic subunitM0639_13990C0ZZC3Positive3024926 - 302587033615.7
dihydroorotaseM0639_13995P9WHL2Positive3025897 - 302720445955.8

Displaying genes 2811 – 2820 of 6983 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.