Rhodococcus qingshengii djl-6

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Nocardiaceae

Genus

Rhodococcus

Description

Rhodococcus qingshengii djl-6 is a notable bacterium characterized by the presence of flagella, which suggests that it is motile. This motility could play a significant role in its ecological interactions and ability to colonize various environments. The genome of R. qingshengii djl-6 consists of six replicons, indicating a complex genetic architecture that may contribute to its adaptability and metabolic versatility. The genomic data for R. qingshengii djl-6 are recorded under several accessions: CP096563.1, CP096564.1, CP096565.1, CP096566.1, CP096567.1, and CP096568.1. These accessions provide a foundation for further genetic and functional analysis of this species. Given its motility and genomic complexity, R. qingshengii djl-6 may be well-suited for diverse ecological niches, potentially allowing it to engage in various biogeochemical processes. The presence of multiple replicons is often associated with the ability to metabolize a wide range of substrates, which could enhance its survival and ecological role in environments where it is found. Understanding these traits can provide insights into the ecological dynamics of Rhodococcus species and their potential applications in bioremediation or other biotechnological fields.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyNocardiaceae
GenusRhodococcus
SpeciesRhodococcus qingshengii
Straindjl-6

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhodococcus qingshengii djl-6, Complete Genome

Gene Summary

Adenine Count

1203420 bp

Thymine Count

1200213 bp

Guanine Count

1997177 bp

Cytosine Count

2004292 bp

Genome Length

6405102 bp

Protein-coding Genes

5831 genes

Non-Coding Genes

86 genes

# of Chromosomes/Plasmids

6

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
duf2631 domain-containing proteinM0639_12000Q9CBU2Negative2605774 - 260604310084.5
1-deoxy-d-xylulose-5-phosphate reductoisomeraseM0639_12005Q0S275Positive2606164 - 260732139654.8
site-2 protease family proteinM0639_12010A0QVH8Positive2607329 - 260854642982.5
flavodoxin-dependent (e)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthaseM0639_12015C1B2V4Positive2608634 - 260979140397.9
gnat family n-acetyltransferaseM0639_12020Not AvailablePositive2609903 - 261073930126.3
penicillin-binding transpeptidase domain-containing proteinM0639_12025A0QNG3Positive2610809 - 261262363839.9
luxr c-terminal-related transcriptional regulatorM0639_12030Q8NML3Negative2612628 - 261343728753.6
amp-binding proteinM0639_12035P39062Positive2613616 - 261523858059.5
abc transporter permease subunitM0639_12040Q5PFQ5Negative2615294 - 261607927346.2
2-aminoethylphosphonate abc transporter permease subunitM0639_12045P96064Negative2616054 - 261695632039.8

Displaying genes 2421 – 2430 of 6983 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.