Rhodococcus qingshengii djl-6

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Nocardiaceae

Genus

Rhodococcus

Description

Rhodococcus qingshengii djl-6 is a notable bacterium characterized by the presence of flagella, which suggests that it is motile. This motility could play a significant role in its ecological interactions and ability to colonize various environments. The genome of R. qingshengii djl-6 consists of six replicons, indicating a complex genetic architecture that may contribute to its adaptability and metabolic versatility. The genomic data for R. qingshengii djl-6 are recorded under several accessions: CP096563.1, CP096564.1, CP096565.1, CP096566.1, CP096567.1, and CP096568.1. These accessions provide a foundation for further genetic and functional analysis of this species. Given its motility and genomic complexity, R. qingshengii djl-6 may be well-suited for diverse ecological niches, potentially allowing it to engage in various biogeochemical processes. The presence of multiple replicons is often associated with the ability to metabolize a wide range of substrates, which could enhance its survival and ecological role in environments where it is found. Understanding these traits can provide insights into the ecological dynamics of Rhodococcus species and their potential applications in bioremediation or other biotechnological fields.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyNocardiaceae
GenusRhodococcus
SpeciesRhodococcus qingshengii
Straindjl-6

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhodococcus qingshengii djl-6, Complete Genome

Gene Summary

Adenine Count

1203420 bp

Thymine Count

1200213 bp

Guanine Count

1997177 bp

Cytosine Count

2004292 bp

Genome Length

6405102 bp

Protein-coding Genes

5831 genes

Non-Coding Genes

86 genes

# of Chromosomes/Plasmids

6

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
tetr/acrr family transcriptional regulatorM0639_11300Q13NG5Negative2458377 - 245897621044.8
nad(p)h-dependent oxidoreductaseM0639_11305Q93T20Positive2459083 - 245964919252.7
siderophore-interacting proteinM0639_11310P9WL30Negative2459705 - 246053230604.1
glutaredoxin-like protein nrdhM0639_11315Q56108Positive2460824 - 24610548381.99
class ib ribonucleoside-diphosphate reductase assembly flavoprotein nrdiM0639_11320C0ZXH4Positive2461137 - 246161618113.4
class 1b ribonucleoside-diphosphate reductase subunit alphaM0639_11325P0CG99Positive2461676 - 246375778957.6
hypothetical proteinM0639_11330Not AvailableNegative2463818 - 24640307792.46
spfh domain-containing proteinM0639_11335Not AvailableNegative2464043 - 246496032828.7
class 1b ribonucleoside-diphosphate reductase subunit betaM0639_11340P9WH70Positive2465131 - 246609636633.7
nudix domain-containing proteinM0639_11345P46351Negative2466170 - 246664317269.4

Displaying genes 2281 – 2290 of 6983 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.