Rhizorhabdus wittichii RW1

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Rhizorhabdaceae

Genus

Rhizorhabdus

Description

Rhizorhabdus wittichii RW1 is a Gram-negative bacterium characterized by its rod-shaped morphology. This organism is notable for possessing three replicons, which may suggest a complex genomic architecture that could be relevant for its adaptability and metabolic capabilities. The strain has been cataloged with several accessions, including NC_009511.1, NC_009508.1, and NC_009507.1, allowing for extensive genomic studies and comparative analyses within the context of microbial taxonomy and phylogeny. The presence of multiple replicons might indicate a potential for enhanced genetic diversity and resilience, traits that can contribute to its survival in varying environmental conditions. Understanding the genomic structure and biological characteristics of R. wittichii RW1 can provide insights into its ecological roles, particularly in soil and aquatic environments where it may participate in nutrient cycling or interact with other microbial communities. Its Gram-negative nature suggests it may have specific interactions with its surroundings, including resistance to certain antibiotics and the ability to form biofilms, which are critical for its survival and ecological function. Overall, R. wittichii RW1 exemplifies the diverse adaptations of microorganisms and their potential contributions to ecosystem dynamics.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilyRhizorhabdaceae
GenusRhizorhabdus
SpeciesRhizorhabdus wittichii
StrainRW1

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhizorhabdus wittichii RW1, complete sequence.

Gene Summary

Adenine Count

848344 bp

Thymine Count

852584 bp

Guanine Count

1840848 bp

Cytosine Count

1840485 bp

Genome Length

5382261 bp

Protein-coding Genes

4972 genes

Non-Coding Genes

57 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
exodeoxyribonuclease iiiSWIT_RS25600Not AvailablePositive183159 - 18396830562.6
cupinSWIT_RS25605Not AvailablePositive183968 - 18445917668.4
dna topoisomerase ibSWIT_RS25610Not AvailablePositive184563 - 18567841760.7
alpha/beta hydrolaseSWIT_RS25615Not AvailableNegative185894 - 18698237427.9
duf4142 domain-containing proteinSWIT_RS25620Not AvailablePositive187167 - 18770318697.3
ybhb/ybcl family raf kinase inhibitor-like proteinSWIT_RS25625Not AvailablePositive187727 - 18958065440.2
duf6894 family proteinSWIT_RS25630Not AvailablePositive189828 - 1900979941.42
mechanosensitive ion channel family proteinSWIT_RS25635Not AvailablePositive190303 - 19139139033.3
glucose 1-dehydrogenaseSWIT_RS25640Not AvailableNegative191600 - 19245130316.7
alpha/beta hydrolaseSWIT_RS25645Not AvailablePositive192720 - 19352029125.5

Displaying genes 5441 – 5450 of 5561 in total

Metabolites

1683 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm00005166-deoxyerythronolide BC21H38O6Chemical structure of 6-deoxyerythronolide BNot available
Average386.5228Da
Monoisotopic386.2668389Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm00005992,5-dihydroxypyridineC5H5NO2Chemical structure of 2,5-dihydroxypyridineNot available
Average111.1Da
Monoisotopic111.0320284Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da

Displaying 1–10 of 1683 metabolites

Health Effects

No health effects information available for this bacterium.