Rhizobium tumorigenes strain 1078

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Arminella

Description

Rhizobium tumorigenes strain 1078 is a Gram-negative bacterium characterized by its rod shape. This strain is notable for its genetic complexity, possessing four replicons, which may contribute to its adaptability and functionality within different environments. The genetic information for this strain can be accessed through several genomic sequences, including NZ_CP117259.1, NZ_CP117255.1, NZ_CP117258.1, and NZ_CP117257.1. As a member of the Rhizobium genus, R. tumorigenes strain 1078 plays a significant role in plant-microbe interactions, particularly in the context of tumor formation in plants, which is facilitated by the transfer of oncogenic T-DNA. This interaction shows the bacterium's potential implications in agricultural practices, particularly in understanding plant diseases and developing biocontrol strategies. The presence of multiple replicons could indicate a robust mechanism for gene regulation and stability, which is critical for the bacterium's survival and interaction with host plants. Consequently, studying Rhizobium tumorigenes strain 1078 may provide insights into microbial genetics and the dynamics of microbial communities associated with plant health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusArminella
SpeciesArminella tumorigenes
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhizobium tumorigenes strain 1078 plasmid unnamed2, complete

Gene Summary

Adenine Count

58449 bp

Thymine Count

60124 bp

Guanine Count

93343 bp

Cytosine Count

92656 bp

Genome Length

304572 bp

Protein-coding Genes

277 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
fad-dependent oxidoreductasePR017_RS22215Not AvailablePositive149197 - 15146484044.6
adenylate dimethylallyltransferase iptPR017_RS22220Not AvailablePositive152167 - 15288626729.4
rolb family proteinPR017_RS22225Not AvailableNegative153386 - 15379315238.8
is21-like element helper atpase istbPR017_RS22230Not AvailableNegative153909 - 15468529430.6
is21 family transposasePR017_RS22235Not AvailableNegative154697 - 15625059167.6
d-nopaline dehydrogenasePR017_RS22240Not AvailableNegative158195 - 15943345306.2
is5 family transposasePR017_RS22245Not AvailableNegative159864 - 16069732356.5
ornithine cyclodeaminasePR017_RS22250Not AvailableNegative160875 - 16193939135.8
nad/nadp octopine/nopaline dehydrogenase family proteinPR017_RS22255Not AvailableNegative161987 - 16306938714.6
arginasePR017_RS22260Not AvailableNegative163145 - 16410134078.8

Displaying genes 4351 – 4360 of 4627 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.