Rhizobium tumorigenes strain 1078

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Arminella

Description

Rhizobium tumorigenes strain 1078 is a Gram-negative bacterium characterized by its rod shape. This strain is notable for its genetic complexity, possessing four replicons, which may contribute to its adaptability and functionality within different environments. The genetic information for this strain can be accessed through several genomic sequences, including NZ_CP117259.1, NZ_CP117255.1, NZ_CP117258.1, and NZ_CP117257.1. As a member of the Rhizobium genus, R. tumorigenes strain 1078 plays a significant role in plant-microbe interactions, particularly in the context of tumor formation in plants, which is facilitated by the transfer of oncogenic T-DNA. This interaction shows the bacterium's potential implications in agricultural practices, particularly in understanding plant diseases and developing biocontrol strategies. The presence of multiple replicons could indicate a robust mechanism for gene regulation and stability, which is critical for the bacterium's survival and interaction with host plants. Consequently, studying Rhizobium tumorigenes strain 1078 may provide insights into microbial genetics and the dynamics of microbial communities associated with plant health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusArminella
SpeciesArminella tumorigenes
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhizobium tumorigenes strain 1078 plasmid pTi1078, complete

Gene Summary

Adenine Count

95741 bp

Thymine Count

96539 bp

Guanine Count

123677 bp

Cytosine Count

123114 bp

Genome Length

439071 bp

Protein-coding Genes

397 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
plasmid partitioning protein repaPR017_RS25615Not AvailablePositive1 - 121245158.3
plasmid partitioning protein repbPR017_RS25620Not AvailablePositive1215 - 225537702.9
plasmid replication protein repcPR017_RS25625Not AvailablePositive2409 - 370146717.0
dead/deah box helicasePR017_RS25630Not AvailablePositive3897 - 575668119.1
cold-shock proteinPR017_RS25635Not AvailableNegative5851 - 60607360.64
histidine kinase dimerization/phosphoacceptor domain -containing proteinPR017_RS25640Not AvailablePositive6592 - 768639765.3
response regulatorPR017_RS25645Not AvailablePositive7690 - 813616232.5
crp/fnr family transcriptional regulatorPR017_RS25650Not AvailablePositive8271 - 898726543.8
duf6894 family proteinPR017_RS25655Not AvailablePositive9027 - 92608224.92
duf3597 domain-containing proteinPR017_RS25660Not AvailableNegative9370 - 979814739.5

Displaying genes 1 – 10 of 4627 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.