Rhizobium tumorigenes strain 1078

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Arminella

Description

Rhizobium tumorigenes strain 1078 is a Gram-negative bacterium characterized by its rod shape. This strain is notable for its genetic complexity, possessing four replicons, which may contribute to its adaptability and functionality within different environments. The genetic information for this strain can be accessed through several genomic sequences, including NZ_CP117259.1, NZ_CP117255.1, NZ_CP117258.1, and NZ_CP117257.1. As a member of the Rhizobium genus, R. tumorigenes strain 1078 plays a significant role in plant-microbe interactions, particularly in the context of tumor formation in plants, which is facilitated by the transfer of oncogenic T-DNA. This interaction shows the bacterium's potential implications in agricultural practices, particularly in understanding plant diseases and developing biocontrol strategies. The presence of multiple replicons could indicate a robust mechanism for gene regulation and stability, which is critical for the bacterium's survival and interaction with host plants. Consequently, studying Rhizobium tumorigenes strain 1078 may provide insights into microbial genetics and the dynamics of microbial communities associated with plant health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusArminella
SpeciesArminella tumorigenes
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhizobium tumorigenes strain 1078 plasmid unnamed2, complete

Gene Summary

Adenine Count

58449 bp

Thymine Count

60124 bp

Guanine Count

93343 bp

Cytosine Count

92656 bp

Genome Length

304572 bp

Protein-coding Genes

277 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nad(p)-binding domain-containing proteinPR017_RS16575Not AvailableNegative3407700 - 340903751380.6
heme-dependent oxidative n-demethylase family proteinPR017_RS16580Not AvailableNegative3409083 - 341012340491.4
pdr/vanb family oxidoreductasePR017_RS16585Not AvailableNegative3410145 - 341111035275.4
dimethylamine monooxygenase subunit dmma family proteinPR017_RS16590Not AvailableNegative3411107 - 341171221540.9
aminomethyltransferase family proteinPR017_RS16595Not AvailableNegative3411725 - 341285842257.6
lysr substrate-binding domain-containing proteinPR017_RS16600Not AvailablePositive3413082 - 341399033534.6
aldehyde dehydrogenase family proteinPR017_RS16605Not AvailablePositive3414126 - 341555050605.9
mandelate racemase/muconate lactonizing enzyme family proteinPR017_RS16610Not AvailablePositive3415589 - 341680644250.2
gmc family oxidoreductasePR017_RS16615Not AvailablePositive3416825 - 341844158012.2
adenylate/guanylate cyclase domain-containing proteinPR017_RS16620Not AvailableNegative3418438 - 341957741642.2

Displaying genes 3591 – 3600 of 4627 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.