Rhizobium tumorigenes strain 1078

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Arminella

Description

Rhizobium tumorigenes strain 1078 is a Gram-negative bacterium characterized by its rod shape. This strain is notable for its genetic complexity, possessing four replicons, which may contribute to its adaptability and functionality within different environments. The genetic information for this strain can be accessed through several genomic sequences, including NZ_CP117259.1, NZ_CP117255.1, NZ_CP117258.1, and NZ_CP117257.1. As a member of the Rhizobium genus, R. tumorigenes strain 1078 plays a significant role in plant-microbe interactions, particularly in the context of tumor formation in plants, which is facilitated by the transfer of oncogenic T-DNA. This interaction shows the bacterium's potential implications in agricultural practices, particularly in understanding plant diseases and developing biocontrol strategies. The presence of multiple replicons could indicate a robust mechanism for gene regulation and stability, which is critical for the bacterium's survival and interaction with host plants. Consequently, studying Rhizobium tumorigenes strain 1078 may provide insights into microbial genetics and the dynamics of microbial communities associated with plant health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusArminella
SpeciesArminella tumorigenes
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhizobium tumorigenes strain 1078 plasmid unnamed2, complete

Gene Summary

Adenine Count

58449 bp

Thymine Count

60124 bp

Guanine Count

93343 bp

Cytosine Count

92656 bp

Genome Length

304572 bp

Protein-coding Genes

277 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type ii toxin-antitoxin system rele/pare family toxinPR017_RS14475Not AvailableNegative2953225 - 295353012177.8
type ii toxin-antitoxin system pard family antitoxinPR017_RS14480Not AvailableNegative2953520 - 29537628941.4
sdr family nad(p)-dependent oxidoreductasePR017_RS14485Not AvailablePositive2953846 - 295470630848.7
lyse family translocatorPR017_RS14490Not AvailablePositive2954767 - 295540822752.4
23s rrna (adenine(2503)-c(2))-methyltransferase rlmnPR017_RS14495Not AvailableNegative2955515 - 295675045719.6
invasion associated locus b family proteinPR017_RS14500Not AvailableNegative2956998 - 295755519521.4
sigma-70 family rna polymerase sigma factorPR017_RS14505Not AvailablePositive2957894 - 295844821070.5
ykva family proteinPR017_RS14510Not AvailableNegative2958474 - 295886314492.6
4a-hydroxytetrahydrobiopterin dehydratasePR017_RS14515Not AvailableNegative2958922 - 295922711302.3
low molecular weight protein-tyrosine-phosphatasePR017_RS14520Not AvailablePositive2959263 - 295974217454.9

Displaying genes 3171 – 3180 of 4627 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.