Rhizobium tumorigenes strain 1078

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Arminella

Description

Rhizobium tumorigenes strain 1078 is a Gram-negative bacterium characterized by its rod shape. This strain is notable for its genetic complexity, possessing four replicons, which may contribute to its adaptability and functionality within different environments. The genetic information for this strain can be accessed through several genomic sequences, including NZ_CP117259.1, NZ_CP117255.1, NZ_CP117258.1, and NZ_CP117257.1. As a member of the Rhizobium genus, R. tumorigenes strain 1078 plays a significant role in plant-microbe interactions, particularly in the context of tumor formation in plants, which is facilitated by the transfer of oncogenic T-DNA. This interaction shows the bacterium's potential implications in agricultural practices, particularly in understanding plant diseases and developing biocontrol strategies. The presence of multiple replicons could indicate a robust mechanism for gene regulation and stability, which is critical for the bacterium's survival and interaction with host plants. Consequently, studying Rhizobium tumorigenes strain 1078 may provide insights into microbial genetics and the dynamics of microbial communities associated with plant health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusArminella
SpeciesArminella tumorigenes
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhizobium tumorigenes strain 1078 plasmid unnamed2, complete

Gene Summary

Adenine Count

58449 bp

Thymine Count

60124 bp

Guanine Count

93343 bp

Cytosine Count

92656 bp

Genome Length

304572 bp

Protein-coding Genes

277 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
3-dehydroquinate synthasePR017_RS14025Not AvailableNegative2860499 - 286162939826.9
shikimate kinasePR017_RS14030Not AvailableNegative2861626 - 286221621797.7
hypothetical proteinPR017_RS14035Not AvailablePositive2862367 - 28625346084.68
site-specific tyrosine recombinase xerdPR017_RS14040Not AvailablePositive2862531 - 286348735233.6
acetyl-coa carboxylase carboxyltransferase subunit alphaPR017_RS14045Not AvailablePositive2863551 - 286450434513.1
l,d-transpeptidase family proteinPR017_RS14050Not AvailablePositive2864739 - 286605247848.3
sulfurtransferase tusa family proteinPR017_RS14055Not AvailablePositive2866045 - 28662788348.12
cobw family gtp-binding proteinPR017_RS14060Not AvailableNegative2866279 - 286744242565.1
d-alanyl-d-alanine carboxypeptidase family proteinPR017_RS14065Not AvailableNegative2867456 - 286858940055.2
m20 aminoacylase family proteinPR017_RS14070Not AvailablePositive2868731 - 286989141028.0

Displaying genes 3081 – 3090 of 4627 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.