Rhizobium tumorigenes strain 1078

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Arminella

Description

Rhizobium tumorigenes strain 1078 is a Gram-negative bacterium characterized by its rod shape. This strain is notable for its genetic complexity, possessing four replicons, which may contribute to its adaptability and functionality within different environments. The genetic information for this strain can be accessed through several genomic sequences, including NZ_CP117259.1, NZ_CP117255.1, NZ_CP117258.1, and NZ_CP117257.1. As a member of the Rhizobium genus, R. tumorigenes strain 1078 plays a significant role in plant-microbe interactions, particularly in the context of tumor formation in plants, which is facilitated by the transfer of oncogenic T-DNA. This interaction shows the bacterium's potential implications in agricultural practices, particularly in understanding plant diseases and developing biocontrol strategies. The presence of multiple replicons could indicate a robust mechanism for gene regulation and stability, which is critical for the bacterium's survival and interaction with host plants. Consequently, studying Rhizobium tumorigenes strain 1078 may provide insights into microbial genetics and the dynamics of microbial communities associated with plant health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusArminella
SpeciesArminella tumorigenes
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhizobium tumorigenes strain 1078 plasmid unnamed2, complete

Gene Summary

Adenine Count

58449 bp

Thymine Count

60124 bp

Guanine Count

93343 bp

Cytosine Count

92656 bp

Genome Length

304572 bp

Protein-coding Genes

277 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
sarcosine oxidase subunit gammaPR017_RS12275Not AvailableNegative2515333 - 251588118752.3
sarcosine oxidase subunit alphaPR017_RS12280Not AvailableNegative2515874 - 2518867108062.0
sarcosine oxidase subunit deltaPR017_RS12285Not AvailableNegative2518864 - 251920513074.2
sarcosine oxidase subunit beta family proteinPR017_RS12290Not AvailableNegative2519441 - 252069445617.5
helix-turn-helix domain-containing proteinPR017_RS12295Not AvailableNegative2520953 - 252182831950.2
sdr family oxidoreductasePR017_RS12300Not AvailablePositive2521936 - 252270927512.8
tetratricopeptide repeat proteinPR017_RS12305Not AvailablePositive2523456 - 252431931233.3
nad(p)/fad-dependent oxidoreductasePR017_RS12310Not AvailablePositive2524478 - 252557838732.6
aa3-type cytochrome c oxidase subunit ivPR017_RS12315Not AvailableNegative2525601 - 25258257804.62
yran family proteinPR017_RS12320Not AvailableNegative2525960 - 252671129061.1

Displaying genes 2731 – 2740 of 4627 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.