Citrobacter youngae strain NCTC13708

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Citrobacter

Description

Citrobacter youngae strain NCTC13708 is a Gram-negative bacterium characterized by its rod shape and the presence of flagella. This strain has been identified as inhabiting soil environments, which suggests its role in soil microbiomes and potential interactions with soil nutrients and organic matter. The organism possesses a single replicon, indicating a streamlined genetic structure that may contribute to its adaptability in various ecological niches. The accession number for this strain is UFWE00000000.1, providing a reference for genetic and genomic studies. Understanding the ecological role of Citrobacter youngae, particularly in soil, can provide insights into its potential contributions to nutrient cycling and soil health. As a member of the broader Citrobacter genus, this strain may participate in the decomposition of organic materials and influence the microbial community structure within its habitat. Its flagellated nature suggests motility, which could enhance its ability to colonize different soil microhabitats, interact with other microorganisms, and contribute to the dynamic processes within soil ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusCitrobacter
SpeciesCitrobacter youngae
Strainstrain NCTC13708

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Citrobacter youngae strain NCTC13708
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatsoils
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Citrobacter youngae strain NCTC13708 genome assembly, contig:

Gene Summary

Adenine Count

1202438 bp

Thymine Count

1199338 bp

Guanine Count

1289595 bp

Cytosine Count

1284517 bp

Genome Length

4975888 bp

Protein-coding Genes

4421 genes

Non-Coding Genes

403 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
protein of uncharacterised function (duf1161)NCTC13708_02617Not AvailablePositive2588979 - 258928410625.4
anaerobic dimethyl sulfoxide reductase chain aNCTC13708_02618Not AvailablePositive2589435 - 259186189387.8
anaerobic dimethyl sulfoxide reductase chain bNCTC13708_02619Not AvailablePositive2591872 - 259248922580.9
anaerobic dimethyl sulfoxide reductase chain cNCTC13708_02620Not AvailablePositive2592491 - 259334530347.2
twin-argninine leader-binding protein dmsdNCTC13708_02621Not AvailablePositive2593388 - 259400223025.3
putative voltage-gated clc-type chloride channel clcbNCTC13708_02622Not AvailablePositive2594123 - 259541245458.8
putative dithiobiotin synthetaseNCTC13708_02623Not AvailableNegative2595368 - 259606324855.3
is3 family transposase bNCTC13708_02625Not AvailablePositive2597028 - 259757621349.3
protein mlc (making large colonies protein)NCTC13708_02626Not AvailableNegative2597588 - 259861937464.5
lysr family transcriptional regulatorNCTC13708_02627Not AvailableNegative2598748 - 259964733333.6

Displaying genes 2661 – 2670 of 4824 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

77 records
Metabolite IDMetabolite nameStructureCAS number
BASm00055001-octadecanoyl-sn-glycero-3-phosphateC21H41O7PChemical structure of 1-octadecanoyl-sn-glycero-3-phosphateNot available
Average436.5198Da
Monoisotopic436.2589902Da
BASm0014033AmmoniaH3NChemical structure of Ammonia7664-41-7
Average17.0305Da
Monoisotopic17.026549101Da
BASm0014041Oleic acidC18H34O2Chemical structure of Oleic acid112-80-1
Average282.4614Da
Monoisotopic282.255880332Da
BASm0014182Vaccenic acidC18H34O2Chemical structure of Vaccenic acidNULL
Average282.468Da
Monoisotopic282.255880335Da
BASm0014219Palmitoleic acidC16H30O2Chemical structure of Palmitoleic acidNULL
Average254.4082Da
Monoisotopic254.224580204Da
BASm0014222DiethanolamineC4H11NO2Chemical structure of DiethanolamineNULL
Average105.1356Da
Monoisotopic105.078978601Da
BASm0017263NADPC21H29N7O17P3Chemical structure of NADP53-59-8
Average744.4129Da
Monoisotopic744.083277073Da
BASm0017395CDP-DG(16:0/18:1(9Z))C46H83N3O15P2Chemical structure of CDP-DG(16:0/18:1(9Z))NULL
Average980.124Da
Monoisotopic979.529942981Da
BASm0017399CDP-DG(18:0/18:1(9Z))C48H87N3O15P2Chemical structure of CDP-DG(18:0/18:1(9Z))NULL
Average1008.178Da
Monoisotopic1007.561243109Da
BASm0017409PA(16:0/18:1(9Z))C37H71O8PChemical structure of PA(16:0/18:1(9Z))NULL
Average674.941Da
Monoisotopic674.488656244Da

Displaying 1–10 of 77 metabolites

Health Effects

No health effects information available for this bacterium.