Citrobacter amalonaticus strain NCTC10805

Gram-negativeRodFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Citrobacter

Description

Citrobacter amalonaticus strain NCTC10805 is a Gram-negative, rod-shaped bacterium that is classified as a facultative anaerobe. This means that it can grow in both the presence and absence of oxygen, which contributes to its versatility in various environments. C. amalonaticus is primarily found in the gut of Homo sapiens, indicating its role in the human microbiota. The strain has been characterized by the presence of flagella, which are important for motility and may influence its ability to colonize and thrive within the gut environment. C. amalonaticus has one replicon, suggesting a relatively simple genetic organization compared to more complex organisms. The genomic data for this strain is accessible under the accession number UFVN00000000.1. Understanding the ecological role of C. amalonaticus in the human gut is crucial, as gut microbiota are known to have significant implications for human health. They contribute to digestion, synthesis of vitamins, and protection against pathogens. The presence of a facultative anaerobe like C. amalonaticus can be indicative of the dynamic interactions occurring in the gut ecosystem, where varying oxygen levels and microbial competition are prevalent. Further research into this strain may provide insights into its specific functions and potential benefits or risks associated with its presence in the human microbiome.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusCitrobacter
SpeciesCitrobacter amalonaticus
Strainstrain NCTC10805

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Citrobacter amalonaticus strain NCTC10805
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatgut
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Citrobacter amalonaticus strain NCTC10805 genome assembly, contig:

Gene Summary

Adenine Count

1188892 bp

Thymine Count

1183059 bp

Guanine Count

1357787 bp

Cytosine Count

1363602 bp

Genome Length

5093340 bp

Protein-coding Genes

5207 genes

Non-Coding Genes

237 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lipopolysaccharide core biosynthesis proteinNCTC10805_00555Not AvailablePositive484517 - 48485213025.9
lipopolysaccharide core biosynthesis protein rfazNCTC10805_00556Not AvailablePositive485163 - 48588827822.5
glycosyltransferase family 9 (heptosyltransferase)NCTC10805_00557Not AvailablePositive486229 - 48700229495.4
o-antigen ligaseNCTC10805_00558Not AvailableNegative487029 - 48763422296.5
o-antigen ligaseNCTC10805_00559Not AvailableNegative487699 - 48829822413.7
lipopolysaccharide heptosyltransferase 1NCTC10805_00560Not AvailableNegative488448 - 48927230913.1
adp-heptose:lps heptosyltransferase iiNCTC10805_00561Not AvailableNegative489276 - 49032238828.2
adp-l-glycero-d-manno-heptose-6-epimeraseNCTC10805_00562Not AvailableNegative490335 - 49126735097.3
2-amino-3-ketobutyrate coenzyme a ligaseNCTC10805_00563Not AvailablePositive491483 - 49247235749.0
2-amino-3-ketobutyrate coenzyme a ligaseNCTC10805_00564Not AvailablePositive492418 - 4926789217.25

Displaying genes 681 – 690 of 5444 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.