Citrobacter amalonaticus strain NCTC10805

Gram-negativeRodFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Citrobacter

Description

Citrobacter amalonaticus strain NCTC10805 is a Gram-negative, rod-shaped bacterium that is classified as a facultative anaerobe. This means that it can grow in both the presence and absence of oxygen, which contributes to its versatility in various environments. C. amalonaticus is primarily found in the gut of Homo sapiens, indicating its role in the human microbiota. The strain has been characterized by the presence of flagella, which are important for motility and may influence its ability to colonize and thrive within the gut environment. C. amalonaticus has one replicon, suggesting a relatively simple genetic organization compared to more complex organisms. The genomic data for this strain is accessible under the accession number UFVN00000000.1. Understanding the ecological role of C. amalonaticus in the human gut is crucial, as gut microbiota are known to have significant implications for human health. They contribute to digestion, synthesis of vitamins, and protection against pathogens. The presence of a facultative anaerobe like C. amalonaticus can be indicative of the dynamic interactions occurring in the gut ecosystem, where varying oxygen levels and microbial competition are prevalent. Further research into this strain may provide insights into its specific functions and potential benefits or risks associated with its presence in the human microbiome.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusCitrobacter
SpeciesCitrobacter amalonaticus
Strainstrain NCTC10805

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Citrobacter amalonaticus strain NCTC10805
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatgut
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Citrobacter amalonaticus strain NCTC10805 genome assembly, contig:

Gene Summary

Adenine Count

1188892 bp

Thymine Count

1183059 bp

Guanine Count

1357787 bp

Cytosine Count

1363602 bp

Genome Length

5093340 bp

Protein-coding Genes

5207 genes

Non-Coding Genes

237 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
propanediol utilization proteinNCTC10805_03625Not AvailablePositive3282605 - 32827515336.7
propanediol utilization: polyhedral bodiesNCTC10805_03626Not AvailablePositive3282755 - 32830309175.04
propanediol utilization: b12 relatedNCTC10805_03627Not AvailablePositive3283040 - 328404736303.5
propanediol utilization: coa-dependent propionaldehyde dehydrogenaseNCTC10805_03628Not AvailablePositive3284044 - 328542948509.8
propanediol utilization: propanol dehydrogenaseNCTC10805_03629Not AvailablePositive3285440 - 328655239584.9
propanediol utilization: polyhedral bodiesNCTC10805_03630Not AvailablePositive3286549 - 328763439260.5
propanediol utilization protein pdutNCTC10805_03631Not AvailablePositive3287905 - 328821910496.1
propanediol utilization protein pdutNCTC10805_03632Not AvailablePositive3288315 - 32884585027.03
propanediol utilization protein pduuNCTC10805_03633Not AvailablePositive3288458 - 328880812521.3
propanediol utilization protein pduvNCTC10805_03634Not AvailablePositive3288813 - 328926516265.5

Displaying genes 3561 – 3570 of 5444 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.