Citrobacter amalonaticus strain NCTC10805

Gram-negativeRodFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Citrobacter

Description

Citrobacter amalonaticus strain NCTC10805 is a Gram-negative, rod-shaped bacterium that is classified as a facultative anaerobe. This means that it can grow in both the presence and absence of oxygen, which contributes to its versatility in various environments. C. amalonaticus is primarily found in the gut of Homo sapiens, indicating its role in the human microbiota. The strain has been characterized by the presence of flagella, which are important for motility and may influence its ability to colonize and thrive within the gut environment. C. amalonaticus has one replicon, suggesting a relatively simple genetic organization compared to more complex organisms. The genomic data for this strain is accessible under the accession number UFVN00000000.1. Understanding the ecological role of C. amalonaticus in the human gut is crucial, as gut microbiota are known to have significant implications for human health. They contribute to digestion, synthesis of vitamins, and protection against pathogens. The presence of a facultative anaerobe like C. amalonaticus can be indicative of the dynamic interactions occurring in the gut ecosystem, where varying oxygen levels and microbial competition are prevalent. Further research into this strain may provide insights into its specific functions and potential benefits or risks associated with its presence in the human microbiome.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusCitrobacter
SpeciesCitrobacter amalonaticus
Strainstrain NCTC10805

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Citrobacter amalonaticus strain NCTC10805
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatgut
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Citrobacter amalonaticus strain NCTC10805 genome assembly, contig:

Gene Summary

Adenine Count

1188892 bp

Thymine Count

1183059 bp

Guanine Count

1357787 bp

Cytosine Count

1363602 bp

Genome Length

5093340 bp

Protein-coding Genes

5207 genes

Non-Coding Genes

237 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
decarboxylaseNCTC10805_02686Not AvailablePositive2435657 - 243622621139.8
cdp-alcohol phosphatidyltransferaseNCTC10805_02687Not AvailablePositive2436219 - 243683622300.5
thiosulfate sulfurtransferaseNCTC10805_02688Not AvailableNegative2436876 - 243818348180.9
abc transporter atp-binding proteinNCTC10805_02689Not AvailableNegative2438271 - 243890322899.0
inner membrane abc transporter permease protein ynjcNCTC10805_02690Not AvailableNegative2438903 - 243985934637.5
putative abc transporter solute-binding proteinNCTC10805_02691Not AvailableNegative2440412 - 244157542422.3
tvp38/tmem64 family inner membrane protein ydjzNCTC10805_02692Not AvailableNegative2441578 - 244225224671.0
exonuclease iiiNCTC10805_02693Not AvailableNegative2442262 - 244313733411.9
bifunctional succinylornithine transaminase/acetylornithine transaminaseNCTC10805_02694Not AvailablePositive2443514 - 244473443365.7
arginine succinyltransferaseNCTC10805_02695Not AvailablePositive2444731 - 244576538636.4

Displaying genes 2701 – 2710 of 5444 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.